Browse Element(s) Details


OsAffx.21075.1.S1_at

Description gb:NM_194150.1
DB_XREF= gi:34915337
GEN=OJ1138_B05.27
TID=OsAffx.21075.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1138_B05.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g025309/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02500OsAffx.617.1.A1_x_at11/117+871299..872596hypothetical protein
LOC_Os07g02500OsAffx.617.1.A1_at11/117+871299..872596hypothetical protein
LOC_Os07g02510OsAffx.19542.3.S1_x_at7/117+878723..882945retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02520OsAffx.21076.1.S1_at11/117+893613..895976hypothetical protein
LOC_Os07g02530OsAffx.21075.1.S1_at9/117+897399..898078hypothetical protein
LOC_Os07g02540OsAffx.16049.1.S1_at11/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02540OsAffx.16049.1.S1_x_at11/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02540OsAffx.3615.1.S1_s_at1/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02550NANA7+916698..917609hypothetical protein
LOC_Os07g02560OsAffx.21075.2.S1_at11/117+918200..919735NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21075.1.S1_at--196--9631Chr07:897705..897729 (25 bp)
TCAGATTACAGCTCCTTCCAAAAGA
LOC_Os07g02530
OsAffx.21075.1.S1_at--661--5931Chr07:897782..897806 (25 bp)
GAGCATCCTGAAATTGCATCCGTAG
LOC_Os07g02530
OsAffx.21075.1.S1_at--203--4991Chr07:897797..897821 (25 bp)
GCATCCGTAGCCATGGAGCTAGCAA
LOC_Os07g02530
OsAffx.21075.1.S1_at--626--3491Chr07:897841..897865 (25 bp)
CATGGTTGCCAATGTCTTTGGTAGA
LOC_Os07g02530
OsAffx.21075.1.S1_at--593--1031Chr07:897872..897896 (25 bp)
AGGTCGAATACCAACACGCTTTACT
LOC_Os07g02530
OsAffx.21075.1.S1_at--310--3351Chr07:897886..897910 (25 bp)
CACGCTTTACTGGAGATTGGTTCTT
LOC_Os07g02530
OsAffx.21075.1.S1_at--235--6611Chr07:897900..897924 (25 bp)
GATTGGTTCTTGCATCCCTAAGAGA
LOC_Os07g02530
OsAffx.21075.1.S1_at--203--6651Chr07:897944..897968 (25 bp)
GTTGTTCTGTTAGGAGGTGCTGATC
LOC_Os07g02530
OsAffx.21075.1.S1_at--644--7311Chr07:897960..897984 (25 bp)
GTGCTGATCAGCCTCAAGGAAGATT
LOC_Os07g02530
OsAffx.21075.1.S1_at--976--9311Chr07:898377..898401 (25 bp)
TCGCCGATTCGTTGGGATTTTCCTG
NONE
OsAffx.21075.1.S1_at--147--10391Chr07:898394..898418 (25 bp)
TTTTCCTGACATGTATGGTCGCCAG
NONE
Target Sequence 
TCAGATTACAGCTCCTTCCAAAAGAAGCTTACTGGTACTTCTTCAAGGTGTGCACATTTGGGAGCATGGATGCTTCAGAG
CATCCTGAAATTGCATCCGTAGCCATGGAGCTAGCAATGGAGTCTGAAAGGAGCTTCATGGTTGCCAATGTCTTTGGTAG
ATTACTGAGGTCGAATACCAACACGCTTTACTGGAGATTGGTTCTTGCATCCCTAAGAGAGTTCAAGAAGAAGATTCGAG
TTGTTCTGTTAGGAGGTGCTGATCAGCCTCAAGGAAGATTTGATGCACTTGGATGGAAATCCCAGATAGCACCTAACTAT
AGCTACACGTATAGCTGTGAGATACAGAGGCCAATGTGTNNNNNTNNNNNNNANTCGCCGATTCGTTGGGATTTTCCTGA
CATGTATGGTCGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis