Browse Element(s) Details


Os.36409.1.S1_x_at

Description gb:CF327810
DB_XREF= gi:33803871
DB_XREF=NACL--02-H05.b1
CLONE=NACL--02-H05
TID=Os.36409.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU082610(C30277),AU062714(C30277)~unknown protein (OJ1460_H08.5), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g108501/11retrotransposon protein, putative, unclassified
LOC_Os08g450101/11ATP-binding cassette sub-family F member 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10830Os.10561.1.S1_at11/117+5883650..5888229Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kD subunit containing protein, expressed
LOC_Os07g10840Os.18257.1.S1_at11/117+5888859..5892428seed imbibition protein, putative, expressed
LOC_Os07g10850Os.33878.1.S1_at6/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.55138.1.S1_x_at2/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10665.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.36409.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.27102.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.15501.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.30445.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10860OsAffx.28395.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.25087.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.33702.1.S1_x_at1/117+5929313..5937569hypothetical protein
LOC_Os07g10870OsAffx.28397.2.S1_at11/117+5940174..5942039hypothetical protein
LOC_Os07g10880Os.17458.1.S1_at11/117+5943031..5944507expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36409.1.S1_x_at--42--9291Chr01:16869099..16869122 (24 bp)
TCCGGCTGTGATGAAGACGACGCTC
NONE
Os.36409.1.S1_x_at--112--331Chr01:16869029..16869053 (25 bp)
ATACTCACCTCACCATACGGAAAAT
NONE
Os.36409.1.S1_x_at--860--1915Chr09:4812465..4812489 (25 bp)
ATTTCTCCTTTTGATTTCATCCTCT
NONE
Os.36409.1.S1_x_at--456--9513Chr10:15702909..15702933 (25 bp)
TCTCGTGCAGCGGATCGACGGGAAC
NONE
Os.36409.1.S1_x_at--472--7611Chr01:16868963..16868987 (25 bp)
GGGAACGCCGACGTGCCCTCAAGAG
NONE
Os.36409.1.S1_x_at--752--1371Chr01:16868934..16868958 (25 bp)
AGAGCGCGCTCCAAACGTCGCTGTG
NONE
Os.36409.1.S1_x_at--169--3291Chr01:16868923..16868947 (25 bp)
CAAACGTCGCTGTGGTGGCATCGTC
NONE
Os.36409.1.S1_x_at--892--10291Chr01:16868826..16868850 (25 bp)
TTTCCCCTCAAGAACCACGAAGAAT
NONE
Os.36409.1.S1_x_at--797--4451NONE
GCCTCCTCCGGCAAAGAAAACTCTG
NONE
Os.36409.1.S1_x_at--281--5531Chr01:16866653..16866677 (25 bp)
GAAAACTCTGGATTTTTCTGGTGCG
NONE
Os.36409.1.S1_x_at--52--5272Chr08:28119567..28119591 (25 bp)
GAATCCAACCATCCTTTTGCTTGAT
LOC_Os08g45010
Target Sequence 
TCCGGCTGTGATGAAGACGACGCTCGTCCTCGCCTACGAGTCTTCGCCAACCCTATCTCTTCCACGTTCCATACTCACCT
CACCATACGGAAAATTTCTCCTTTTGATTTCATCCTCTCTCGTGCAGCGGATCGACGGGAACGCCGACGTGCCCTCAAGA
GCTCCAGAGCGCGCTCCAAACGTCGCTGTGGTGGCATCGTCGCCGTCGCCACCGATCTGGACCAAGCCGGGCCATGCCAT
CGCGCCATCGTCTTCGCCTCGTACTCCTCTCCATTTCCCCTCAAGAACCACGAAGAATGGTGCTACGAGTGTGGAGATCG
GCCACCGTCTTCTTCACCTCCGGTTGCCGTCGCCATTGTCGTTTCCGCCTCCTCCGGCAAAGAAAACTCTGGATTTTTCT
GGTGCGNGTGAGGATTGCTTTGGCAAGAGCTTTGTTTATGAATCCAACCATCCTTTTGCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36409.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis