Browse Element(s) Details


Os.47857.1.S1_at

Description gb:AK121714.1
DB_XREF= gi:37991337
TID=Os.47857.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079D24, full insert sequence.
FL= gb:AK058996.1 gb:AK121714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1082011/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10770Os.10176.1.S1_at11/117+5851080..5857018Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os07g10780Os.52422.1.S1_s_at11/117+5863037..5864374Remorin, C-terminal region family protein, expressed
LOC_Os07g10790OsAffx.28394.1.S1_at11/117+5871641..5872185hypothetical protein
LOC_Os07g10800NANA7+5873626..5874132hypothetical protein
LOC_Os07g10810Os.17465.2.A1_at4/117+5875090..5878100hypothetical protein
LOC_Os07g10810OsAffx.29276.1.S1_at1/117+5875090..5878100hypothetical protein
LOC_Os07g10820Os.47857.1.S1_at11/117+5878489..5882657transporter, putative, expressed
LOC_Os07g10830Os.10561.1.S1_at11/117+5883650..5888229Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kD subunit containing protein, expressed
LOC_Os07g10840Os.18257.1.S1_at11/117+5888859..5892428seed imbibition protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47857.1.S1_at--70--4331Chr07:5882206..5882230 (25 bp)
CCTTGTGTTCAAGCGTGACCGGGAG
LOC_Os07g10820
Os.47857.1.S1_at--184--5271Chr07:5882230..5882254 (25 bp)
GAATGCGAAACTGTCGAGCTTCAAG
LOC_Os07g10820
Os.47857.1.S1_at--796--2011Chr07:5882292..5882316 (25 bp)
ACTAAAGCTCTGGTCTGGCAGCTCA
LOC_Os07g10820
Os.47857.1.S1_at--723--1011Chr07:5882327..5882351 (25 bp)
AGGTTCGGGCTTCTTCAGGCTACAA
LOC_Os07g10820
Os.47857.1.S1_at--485--2711Chr07:5882356..5882380 (25 bp)
AAGCATTCATCTTCAGGTGGATAGT
LOC_Os07g10820
Os.47857.1.S1_at--643--5831Chr07:5882383..5882407 (25 bp)
GACCTGGTGATTACCCATGTGGAGA
LOC_Os07g10820
Os.47857.1.S1_at--880--6811Chr07:5882417..5882441 (25 bp)
GTTTTTGCTGTAACTGTTTGCAGGC
LOC_Os07g10820
Os.47857.1.S1_at--1140--51Chr07:5882443..5882467 (25 bp)
ATTGCAGCTATCATGACCACTTGTT
LOC_Os07g10820
Os.47857.1.S1_at--465--5831Chr07:5882457..5882481 (25 bp)
GACCACTTGTTCTTTGGTAGGCAAA
LOC_Os07g10820
Os.47857.1.S1_at--1159--8511Chr07:5882560..5882584 (25 bp)
TGGAAAATTCCACTGTCAACAGATT
LOC_Os07g10820
Os.47857.1.S1_at--879--1251Chr07:5882627..5882651 (25 bp)
AGATTGCTCTGGGTGCTGAGCTGAC
LOC_Os07g10820
Target Sequence 
CCTTGTGTTCAAGCGTGACCGGGAGAATGCGAAACTGTCGAGCTTCAAGGATCAGGAGCTGGTATGAAGAAACCGCTTGN
GCTCCGACTAAAGCTCTGGTCTGGCAGCTCAAAGNAAATTCAGGTTCGGGCTTCTTCAGGCTACAACATGAAGCATTCAT
CTTCAGGTGGATAGTTTGACCTGGTGATTACCCATGTGGAGAGAAAGTGGTGTTTTTGCTGTAACTGTTTGCAGGCAATT
GCAGCTATCATGACCACTTGTTCTTTGGTAGGCAAAGAGAGAGTAGATGGTGTAATCCATGCTGATGTGATTTATGTTAG
TAATACCGAATTCCTAGTTTTGTAACGGATTAACTGGAAAATTCCACTGTCAACAGATTCAGTTTGGATATTATGCTCAT
TATTCAGAATACAATTTTTTGAGATTGCTCTGGGTGCTGAGCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis