Browse Element(s) Details


Os.27240.1.S1_at

Description gb:AK072591.1
DB_XREF= gi:32982614
TID=Os.27240.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133N22, full insert sequence.
FL= gb:AK072591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4403011/11WD40 associated region in TFIID subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44010Os.50015.1.S1_at11/116+26509009..26510702WRKY2 protein, putative, expressed
LOC_Os06g44020OsAffx.15917.1.S1_at11/116+26514060..26515821hypothetical protein
LOC_Os06g44030Os.27240.1.S1_at11/116+26528308..26537025WD40 associated region in TFIID subunit family protein, expressed
LOC_Os06g44030Os.14421.2.S1_x_at1/116+26528308..26537025WD40 associated region in TFIID subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27240.1.S1_at--72--791Chr06:26535749..26535773 (25 bp)
ATGTGGGATCTCTCTTCTGGTCGGT
LOC_Os06g44030
Os.27240.1.S1_at--480--5631Chr06:26535792..26535816 (25 bp)
GACACAGCTCTTGTGTGTGGTCACT
LOC_Os06g44030
Os.27240.1.S1_at--758--7351Chr06:26536388..26536412 (25 bp)
GTGAAACTCTGGGATGTTGCCTCCA
LOC_Os06g44030
Os.27240.1.S1_at--734--6291Chr06:26536433..26536540 (25 bp)
GATGATACCTCAACTAACCGGCTGA
LOC_Os06g44030
Os.27240.1.S1_at--798--991Chr06:26536540..26536564 (25 bp)
AGGATGCTCAAAACTCTCCGTACAA
LOC_Os06g44030
Os.27240.1.S1_at--877--371Chr06:26536566..26536590 (25 bp)
ATCAACTCCTGTTTATACTCTGCGG
LOC_Os06g44030
Os.27240.1.S1_at--204--4311Chr06:26536805..26536829 (25 bp)
CCTAGTGAGTAGTGAGCCTGCTTTT
LOC_Os06g44030
Os.27240.1.S1_at--616--7891Chr06:26536832..26536856 (25 bp)
GGTTAATCTGTAGCACGCGCGTATT
LOC_Os06g44030
Os.27240.1.S1_at--897--1811Chr06:26536846..26536870 (25 bp)
ACGCGCGTATTGTAATTCGTTCCAA
LOC_Os06g44030
Os.27240.1.S1_at--295--6691Chr06:26536864..26536888 (25 bp)
GTTCCAATGTTTGTTGTCTTGTGAC
LOC_Os06g44030
Os.27240.1.S1_at--1061--3491Chr06:26536921..26536945 (25 bp)
CATGTAATTCTTTTTCTGGCGGTGA
LOC_Os06g44030
Target Sequence 
ATGTGGGATCTCTCTTCTGGTCGGTGCGTTTCACCACTTGGGGGACACAGCTCTTGTGTGTGGTCACTTGCTTACAGTTG
TGAAGGGGCATTGCTTGCATCTGGATCAGCCGACTGCACTGTGAAACTCTGGGATGTTGCCTCCAGCACGAAGGTCCTTA
AGACAGATGATACCTCAACTAACCGGCTGAGGATGCTCAAAACTCTCCGTACAAAATCAACTCCTGTTTATACTCTGCGG
TTTTCTCGGCGAAATCTTTTATTTGCGGCTGGTGCTCTCTCACTTGGCTCCTAAGCTTCTGTATGTTCTGTAGAATACAA
CTACCAAACATTCTTTCAGTTTTATCTCAAGTGAAGTTAGTGCCTAGTGAGTAGTGAGCCTGCTTTTAAGGTTAATCTGT
AGCACGCGCGTATTGTAATTCGTTCCAATGTTTGTTGTCTTGTGACTTTGTAAGTTGTAACAATCGCCTTATTTAAATCA
TGTAATTCTTTTTCTGGCGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis