Browse Element(s) Details


Os.50015.1.S1_at

Description gb:AK106282.1
DB_XREF= gi:32991491
TID=Os.50015.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.50015 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-A04, full insert sequence.
FL= gb:AK119644.1 gb:AK106282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4401011/11WRKY2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43970OsAffx.5099.1.S1_at10/116+26488450..26488888hypothetical protein
LOC_Os06g43980Os.51521.1.S1_at11/116+26490477..26493004expressed protein
LOC_Os06g43980Os.51521.1.S2_at10/116+26490477..26493004expressed protein
LOC_Os06g43980OsAffx.15916.1.S1_at1/116+26490477..26493004expressed protein
LOC_Os06g43990Os.16011.1.A1_at11/116+26495540..26497431expressed protein
LOC_Os06g44000OsAffx.28092.1.S1_at11/116+26499618..26500169hypothetical protein
LOC_Os06g44010Os.50015.1.S1_at11/116+26509009..26510702WRKY2 protein, putative, expressed
LOC_Os06g44020OsAffx.15917.1.S1_at11/116+26514060..26515821hypothetical protein
LOC_Os06g44030Os.27240.1.S1_at11/116+26528308..26537025WD40 associated region in TFIID subunit family protein, expressed
LOC_Os06g44030Os.14421.2.S1_x_at1/116+26528308..26537025WD40 associated region in TFIID subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50015.1.S1_at--956--9491Chr06:26509319..26509343 (25 bp)
TCTCGCCGACCAAGAACTGATCCAT
LOC_Os06g44010
Os.50015.1.S1_at--17--1971Chr06:26509304..26509328 (25 bp)
ACTGATCCATCGTTAGAACGCCGAT
LOC_Os06g44010
Os.50015.1.S1_at--323--5451Chr06:26509289..26509313 (25 bp)
GAACGCCGATGAACTTTGCTCGATT
LOC_Os06g44010
Os.50015.1.S1_at--1029--2511Chr06:26509278..26509302 (25 bp)
AACTTTGCTCGATTTAGCTGAGATC
LOC_Os06g44010
Os.50015.1.S1_at--190--9391Chr06:26509255..26509279 (25 bp)
TCGATCGATCAATTTACACGGTAAA
LOC_Os06g44010
Os.50015.1.S1_at--848--6051Chr06:26509224..26509248 (25 bp)
GAGTTGATCGATTTGCATGGCTTTG
LOC_Os06g44010
Os.50015.1.S1_at--965--3491Chr06:26509209..26509233 (25 bp)
CATGGCTTTGATCGGAGTTAGGCTA
LOC_Os06g44010
Os.50015.1.S1_at--906--9731Chr06:26509143..26509167 (25 bp)
TAATTAGCTCGCTCTACACGTGCCA
LOC_Os06g44010
Os.50015.1.S1_at--188--4391Chr06:26509122..26509146 (25 bp)
GCCAAGGTGGCAGTTTAAGCAAAAC
LOC_Os06g44010
Os.50015.1.S1_at--627--7431Chr06:26509055..26509079 (25 bp)
GTGTATTCATGGAGATCTATTCAGA
LOC_Os06g44010
Os.50015.1.S1_at--645--3691Chr06:26509039..26509063 (25 bp)
CTATTCAGAGTCTCCCAGATATATA
LOC_Os06g44010
Target Sequence 
TCTCGCCGACCAAGAACTGATCCATCGTTAGAACGCCGATGAACTTTGCTCGATTTAGCTGAGATCGATCGATCAATTTA
CACGGTAAAATTTTAGAGTTGATCGATTTGCATGGCTTTGATCGGAGTTAGGCTAGAGAGAGAGAGGATTAACTGTGTAT
ATTTAGTGATTGATTTTAATTAGCTCGCTCTACACGTGCCAAGGTGGCAGTTTAAGCAAAACGTACGATAATTCGTTGCA
ATTTGTAATTCAGCTAGAAGATTAGTGTATTCATGGAGATCTATTCAGAGTCTCCCAGATATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis