Browse Element(s) Details


Os.51521.1.S1_at

Description gb:AK063675.1
DB_XREF= gi:32973693
TID=Os.51521.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-D11, full insert sequence.
FL= gb:AK063675.1 gb:AK106303.1 gb:AK063001.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4398011/11expressed protein
LOC_Os02g081201/11Calmodulin-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43940Os.27468.1.S1_at11/116+26470846..26472966expressed protein
LOC_Os06g43950OsAffx.5098.1.S1_at11/116+26477482..26478274expressed protein
LOC_Os06g43960Os.53651.1.S1_at11/116+26481248..26482813expressed protein
LOC_Os06g43960Os.16254.1.S1_at2/116+26481248..26482813expressed protein
LOC_Os06g43970OsAffx.5099.1.S1_at10/116+26488450..26488888hypothetical protein
LOC_Os06g43980Os.51521.1.S1_at11/116+26490477..26493004expressed protein
LOC_Os06g43980Os.51521.1.S2_at10/116+26490477..26493004expressed protein
LOC_Os06g43980OsAffx.15916.1.S1_at1/116+26490477..26493004expressed protein
LOC_Os06g43990Os.16011.1.A1_at11/116+26495540..26497431expressed protein
LOC_Os06g44000OsAffx.28092.1.S1_at11/116+26499618..26500169hypothetical protein
LOC_Os06g44010Os.50015.1.S1_at11/116+26509009..26510702WRKY2 protein, putative, expressed
LOC_Os06g44020OsAffx.15917.1.S1_at11/116+26514060..26515821hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51521.1.S1_at--609--4711Chr06:26492340..26492364 (25 bp)
GCTGGCCAGTATCTGTACTTTGTCT
LOC_Os06g43980
Os.51521.1.S1_at--737--3651Chr06:26492286..26492310 (25 bp)
CTTCTAGATCTGGAAACTGCCTTTT
LOC_Os06g43980
Os.51521.1.S1_at--888--2372Chr06:26492273..26492297 (25 bp)
AAACTGCCTTTTGTCACATTTTATT
LOC_Os06g43980
Os.51521.1.S1_at--563--7851Chr06:26492232..26492256 (25 bp)
GGTTCAAGTTCAGCTGAACCCCATG
LOC_Os06g43980
Os.51521.1.S1_at--202--631Chr06:26492210..26492234 (25 bp)
ATGCTCAGCGAGTCGCGAGGCGATT
LOC_Os06g43980
Os.51521.1.S1_at--975--6211Chr06:26492194..26492218 (25 bp)
GAGGCGATTGCAACATCGGCCATTT
LOC_Os06g43980
Os.51521.1.S1_at--1047--2091Chr06:26492182..26492206 (25 bp)
ACATCGGCCATTTCATCTCCGCTAG
LOC_Os06g43980
Os.51521.1.S1_at--100--9511Chr06:26492167..26492191 (25 bp)
TCTCCGCTAGCGGTGGCTGATGATG
LOC_Os06g43980
Os.51521.1.S1_at--424--4751Chr06:26492152..26492176 (25 bp)
GCTGATGATGGCATTCGCTCCAAAA
LOC_Os06g43980
Os.51521.1.S1_at--36--2611Chr06:26492127..26492151 (25 bp)
AACCGCGGCTCGTTTGAAGAGTTGC
LOC_Os06g43980
Os.51521.1.S1_at--443--6671Chr06:26492107..26492131 (25 bp)
GTTGCAAATAGTTTACACCCCTGGA
LOC_Os06g43980
Target Sequence 
GCTGGCCAGTATCTGTACTTTGTCTGGAATTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTG
TCACATTTTATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAGGCGATTGCAAC
ATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCCAAAAAACCGCGGCTCGTTTGAAGAGTTGCAA
ATAGTTTACACCCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis