Browse Element(s) Details


OsAffx.15916.1.S1_at

Description tigr:9634.m04254
TID=OsAffx.15916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g439801/11expressed protein
LOC_Os08g167801/11Sin-like protein conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43940Os.27468.1.S1_at11/116+26470846..26472966expressed protein
LOC_Os06g43950OsAffx.5098.1.S1_at11/116+26477482..26478274expressed protein
LOC_Os06g43960Os.53651.1.S1_at11/116+26481248..26482813expressed protein
LOC_Os06g43960Os.16254.1.S1_at2/116+26481248..26482813expressed protein
LOC_Os06g43970OsAffx.5099.1.S1_at10/116+26488450..26488888hypothetical protein
LOC_Os06g43980Os.51521.1.S1_at11/116+26490477..26493004expressed protein
LOC_Os06g43980Os.51521.1.S2_at10/116+26490477..26493004expressed protein
LOC_Os06g43980OsAffx.15916.1.S1_at1/116+26490477..26493004expressed protein
LOC_Os06g43990Os.16011.1.A1_at11/116+26495540..26497431expressed protein
LOC_Os06g44000OsAffx.28092.1.S1_at11/116+26499618..26500169hypothetical protein
LOC_Os06g44010Os.50015.1.S1_at11/116+26509009..26510702WRKY2 protein, putative, expressed
LOC_Os06g44020OsAffx.15917.1.S1_at11/116+26514060..26515821hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15916.1.S1_at--990--2051Chr06:26490822..26490896 (25 bp)
ACTTCGTATTGTGGTGGCCATCTGA
LOC_Os06g43980
OsAffx.15916.1.S1_at--278--6471NONE
GATAACCAAGGAAGTGTTACCCAAT
NONE
OsAffx.15916.1.S1_at--1138--5311NONE
GAAGTGTTACCCAATCTTATGTTTT
NONE
OsAffx.15916.1.S1_at--940--10471Chr06:26489744..26489768 (25 bp)
TTAAAGACGCAGTCTACCTCCGTTT
NONE
OsAffx.15916.1.S1_at--417--6851Chr06:26489723..26489747 (25 bp)
GTTTCCTACTGCGTGTCTGCGGGCA
NONE
OsAffx.15916.1.S1_at--274--9911Chr06:26489717..26489741 (25 bp)
TACTGCGTGTCTGCGGGCAGATCCC
NONE
OsAffx.15916.1.S1_at--896--7571Chr06:26489703..26489727 (25 bp)
GGGCAGATCCCGCATTACTCCAGAT
NONE
OsAffx.15916.1.S1_at--362--9216Chr08:10253925..10253944 (20 bp)
TCCAGATCCCGTTGCAACGCATGGG
LOC_Os08g16780
OsAffx.15916.1.S1_at--1159--2591Chr06:26489670..26489694 (25 bp)
AACGCATGGGACAGTACTTGTCTCG
NONE
OsAffx.15916.1.S1_at--60--5611Chr06:26489661..26489685 (25 bp)
GACAGTACTTGTCTCGGGAAAGGAA
NONE
OsAffx.15916.1.S1_at--228--3831Chr06:26489498..26489522 (25 bp)
CTGCGGCCGGCTTGGGATGTTCCCC
NONE
Target Sequence 
ACTTCGTATTGTGGTGGCCATCTGATGCCAAAGTACCTGGACCAACTTCTCCAGAATGTTGGAAACATGGAATGGAATGT
GGTTCTTGCACCTAGGATGGTCATTCTGTTAATGATAACCAAGGAAGTGTTACCCAATCTTATGTTTTTTTTCTCTAATA
ATTTAAAGACGCAGTCTACCTCCGTTTCCTACTGCGTGTCTGCGGGCAGATCCCGCATTACTCCAGATCCCGTTGCAACG
CATGGGACAGTACTTGTCTCGGGAAAGGAAAAAGTACACCGAAGGTCCCTCAACTTGTCATCGAGTTACAAAATCGTCCT
TGAACCGCAAAACCAGATACAACTCATCCCCCATCTTGCATCCCCCCGATCCATCCACCGGTGCTACCCCTACCTCCGCG
CGGCGATGCTGCGGCCGGCTTGGGATGTTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis