Browse Element(s) Details

Os.51301.1.S1_x_at

Description

gb:AK062475.1
DB_XREF= gi:32972493
TID=Os.51301.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F06, full insert sequence.
FL= gb:AK062475.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g45360	11/11	metallopeptidase family M24 containing protein, expressed
LOC_Os11g33330	5/11	metallopeptidase family M24 containing protein, expressed
LOC_Os11g33340	3/11	metallopeptidase family M24 containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g45320	OsAffx.15935.1.S1_at	11/11	6	+	27395212..27395879	hypothetical protein
LOC_Os06g45320	OsAffx.15935.1.S1_x_at	11/11	6	+	27395212..27395879	hypothetical protein
LOC_Os06g45330	Os.17695.1.S1_at	9/11	6	+	27396477..27399413	Endonuclease V, putative, expressed
LOC_Os06g45340	Os.47784.1.S1_at	11/11	6	+	27401469..27402749	FK506-binding protein, putative, expressed
LOC_Os06g45350	Os.34343.1.S2_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45350	Os.34343.1.S1_a_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45350	Os.49575.1.S1_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45350	Os.34343.1.S2_s_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45360	Os.51301.1.S1_at	11/11	6	+	27418371..27426848	metallopeptidase family M24 containing protein, expressed
LOC_Os06g45360	Os.51301.1.S1_x_at	11/11	6	+	27418371..27426848	metallopeptidase family M24 containing protein, expressed
LOC_Os06g45370	Os.15065.1.S1_at	11/11	6	+	27427893..27430110	fructose-1,6-bisphosphatase family protein, expressed
LOC_Os06g45380	OsAffx.28116.1.S1_s_at	11/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380	OsAffx.28116.1.S1_x_at	11/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380	Os.17353.1.S1_at	10/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380	Os.20764.1.S1_s_at	1/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45390	OsAffx.15936.1.S1_at	10/11	6	+	27440488..27443852	expressed protein
LOC_Os06g45399	NA	NA	6	+	27445969..27446559	NA

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Gene Ontology Classification

GO id	Type	Name
GO:0006508	biological_process	proteolysis
GO:0009926	biological_process	auxin polar transport
GO:0005886	cellular_component	plasma membrane
GO:0004177	molecular_function	aminopeptidase activity
GO:0009983	molecular_function	tyrosine aminopeptidase activity
GO:0010013	molecular_function	N-1-naphthylphthalamic acid binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51301.1.S1_x_at--777--563	2	Chr11:19214696..19214720 (25 bp)	GACACTGTTTCAGCTTTCTTCTGAC	LOC_Os11g33330
Os.51301.1.S1_x_at--200--819	1	Chr06:27424792..27424816 (25 bp)	GGAAGGATCGTCCTCCTGTTAATGC	LOC_Os06g45360
Os.51301.1.S1_x_at--734--379	1	Chr06:27424780..27424804 (25 bp)	CTCCTGTTAATGCTCTACCTGTATT	LOC_Os06g45360
Os.51301.1.S1_x_at--781--481	2	Chr11:19214632..19214656 (25 bp)	GCTCTACCTGTATTTGTGCAACCTG	LOC_Os11g33330
Os.51301.1.S1_x_at--160--559	2	Chr11:19230223..19230247 (25 bp)	GAAATGATGTGCACTACAGCCCAGT	LOC_Os11g33340
Os.51301.1.S1_x_at--438--435	2	Chr11:19214334..19214358 (25 bp)	CCAGTGGTCCATTCTTATTCTATTG	LOC_Os11g33330
Os.51301.1.S1_x_at--274--271	3	Chr11:19229948..19229972 (25 bp)	AAGCTTGCTTGCATCTGGACAGCTA	LOC_Os11g33340
Os.51301.1.S1_x_at--60--673	1	Chr06:27424192..27424216 (25 bp)	GTTCTGCAGTCAATGGTAGCTCTCA	LOC_Os06g45360
Os.51301.1.S1_x_at--502--883	1	Chr06:27424128..27424152 (25 bp)	TGATTCAAATTCATGCTGCCTTGCA	LOC_Os06g45360
Os.51301.1.S1_x_at--629--443	2	Chr11:19229841..19229865 (25 bp)	GCCTTGCACTCTACTCAAAACTGGA	LOC_Os11g33340
Os.51301.1.S1_x_at--1162--671	2	Chr11:19213932..19213956 (25 bp)	GTTCTGATGCTGCAATCACCTATTG	LOC_Os11g33330

Target Sequence

GACACTGTTTCAGCTTTCTTCTGACTTGGTAGATGAAATATGGAAGGATCGTCCTCCTGTTAATGCTCTACCTGTATTTG
TGCAACCTGTAGAGTATGCTGGGTGTAGTGTTACCGAAAAACTTAAGGAGTTAAGAGAAAAATTACAACATGAAAAGGCT
AGGGGCATTATAATTGCTGCGCTTGATGAGGTTGCGTGGTTGTACAACATTAGAGGAAATGATGTGCACTACAGCCCAGT
GGTCCATTCTTATTCTATTGTAACCTTGCACAGTGCTTTCTTTTATGTGGATAAGAGAAAAGTATCTGTTGAGGTCCAGA
ACTACATGACTGAGAATGGTATTGACATCAAAGACTATAATATGGTTCAATCAGATGCAAGCTTGCTTGCATCTGGACAG
CTAAAAGGTTCTGCAGTCAATGGTAGCTCTCATGGGGAAAATGATATGAATGAGAATTCAAAAGTTTGGATTGATTCAAA
TTCATGCTGCCTTGCACTCTACTCAAAACTGGATCAATATCAAGTTCTGATGCTGCAATCACCTATTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis