Browse Element(s) Details


OsAffx.15936.1.S1_at

Description tigr:9634.m04409
TID=OsAffx.15936.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4539010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45350Os.34343.1.S2_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.34343.1.S1_a_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.49575.1.S1_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.34343.1.S2_s_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45360Os.51301.1.S1_at11/116+27418371..27426848metallopeptidase family M24 containing protein, expressed
LOC_Os06g45360Os.51301.1.S1_x_at11/116+27418371..27426848metallopeptidase family M24 containing protein, expressed
LOC_Os06g45370Os.15065.1.S1_at11/116+27427893..27430110fructose-1,6-bisphosphatase family protein, expressed
LOC_Os06g45380OsAffx.28116.1.S1_s_at11/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380OsAffx.28116.1.S1_x_at11/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380Os.17353.1.S1_at10/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380Os.20764.1.S1_s_at1/116+27432423..27440151Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45390OsAffx.15936.1.S1_at10/116+27440488..27443852expressed protein
LOC_Os06g45399NANA6+27445969..27446559NA
LOC_Os06g45410Os.50003.1.S1_at11/116+27455060..27458560myb family transcription factor-related protein, putative, expressed
LOC_Os06g45420OsAffx.15937.1.S1_at11/116+27461108..27462017hypothetical protein
LOC_Os06g45430Os.4719.1.S1_at11/116+27465368..27468861LEM3 family/CDC50 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15936.1.S1_at--1158--9351Chr06:27442761..27442785 (25 bp)
TCGAAGAGAAGCCACCTATGTCATT
LOC_Os06g45390
OsAffx.15936.1.S1_at--817--3211Chr06:27441650..27441674 (25 bp)
CAAGGGCACCCCATATGAAGGAGCT
LOC_Os06g45390
OsAffx.15936.1.S1_at--1034--6991Chr06:27441616..27441640 (25 bp)
GTACAGTGGCCCTGATGTTGTAACT
LOC_Os06g45390
OsAffx.15936.1.S1_at--1041--8431Chr06:27441560..27441584 (25 bp)
TGGCCAACACTCTCCCAGGAAATAT
LOC_Os06g45390
OsAffx.15936.1.S1_at--914--2251Chr06:27441541..27441565 (25 bp)
AAATATACCCTCTTCAGTAAAGCGG
LOC_Os06g45390
OsAffx.15936.1.S1_at--54--7171NONE
GTCTCTTAAGAACAATCCAGGCTGG
NONE
OsAffx.15936.1.S1_at--1128--8131Chr06:27440672..27440696 (25 bp)
GGACAAGTTTGCTCGTGAAGTTTCA
LOC_Os06g45390
OsAffx.15936.1.S1_at--382--5531Chr06:27440633..27440657 (25 bp)
GAAAACTCCCATACACTGTTGTAAG
LOC_Os06g45390
OsAffx.15936.1.S1_at--122--7071Chr06:27440613..27440637 (25 bp)
GTAAGATCTCACTTAGCCCCAGGAA
LOC_Os06g45390
OsAffx.15936.1.S1_at--1127--8871Chr06:27440553..27440577 (25 bp)
TGAGGTTTTCTTTAGTCTGTGCACT
LOC_Os06g45390
OsAffx.15936.1.S1_at--619--8692Chr06:12924368..12924690 (25 bp)
TGTGCACTTCTTTTCCTTTGTATTG
NONE
Target Sequence 
TCGAAGAGAAGCCACCTATGTCATTGGAGGATATGCTACAGAAGGTGAAGCCATTCATAGTTGCGTATGAGGGCATCCAG
AACCAGGAGGAATGGGAGGAAGCTGTGAAAGATGTAATGGCAAGGGCACCCCATATGAAGGAGCTGATAGATATGTACAG
TGGCCCTGATGTTGTAACTGCAAAGCAACAAGAAGAAGAGCTGCAAAGAGTGGCCAACACTCTCCCAGGAAATATACCCT
CTTCAGTAAAGCGGTTTACTGATAAAACTCTACTGTCTCTTAAGAACAATCCAGGCTGGGGTTTTGACAAGAAATGCCAA
TTCATGGACAAGTTTGCTCGTGAAGTTTCAGAGCTATACAAATAGAAAACTCCCATACACTGTTGTAAGATCTCACTTAG
CCCCAGGAAGATTTTGTGGTTTATTTTTTCTATTTTGAGAAAAGTGAGGTTTTCTTTAGTCTGTGCACTTCTTTTCCTTT
GTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis