Browse Element(s) Details


Os.47784.1.S1_at

Description gb:AK105843.1
DB_XREF= gi:32991052
TID=Os.47784.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-F10, full insert sequence.
FL= gb:AK105843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4534011/11FK506-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45290NANA6+27376785..27377475Pollen allergen family protein, expressed
LOC_Os06g45300Os.11751.1.S1_a_at11/116+27383308..27385860serine/threonine protein kinase, putative, expressed
LOC_Os06g45310OsAffx.5113.1.S1_at10/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45310Os.51367.1.S1_x_at1/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45310OsAffx.2442.1.S1_x_at1/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45320OsAffx.15935.1.S1_at11/116+27395212..27395879hypothetical protein
LOC_Os06g45320OsAffx.15935.1.S1_x_at11/116+27395212..27395879hypothetical protein
LOC_Os06g45330Os.17695.1.S1_at9/116+27396477..27399413Endonuclease V, putative, expressed
LOC_Os06g45340Os.47784.1.S1_at11/116+27401469..27402749FK506-binding protein, putative, expressed
LOC_Os06g45350Os.34343.1.S2_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.34343.1.S1_a_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.49575.1.S1_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.34343.1.S2_s_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45360Os.51301.1.S1_at11/116+27418371..27426848metallopeptidase family M24 containing protein, expressed
LOC_Os06g45360Os.51301.1.S1_x_at11/116+27418371..27426848metallopeptidase family M24 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47784.1.S1_at--134--5191Chr06:27402208..27402336 (25 bp)
GCAAGGGCAGCTCATCAAGGCGCAT
LOC_Os06g45340
Os.47784.1.S1_at--186--9731Chr06:27402194..27402215 (22 bp)
TCAAGGCGCATTACACCGGGAGGCT
LOC_Os06g45340
Os.47784.1.S1_at--342--5751Chr06:27402165..27402189 (25 bp)
GACGGCACGGTGTTCGACAGCAGCT
LOC_Os06g45340
Os.47784.1.S1_at--258--9371Chr06:27402152..27402176 (25 bp)
TCGACAGCAGCTACAAGCGCGGGAA
LOC_Os06g45340
Os.47784.1.S1_at--207--9711Chr06:27401938..27401962 (25 bp)
TCAAAGGATGGGACCAGGGCATAGT
LOC_Os06g45340
Os.47784.1.S1_at--969--1891Chr06:27401624..27401648 (25 bp)
ACGTCGAGTACGTCGGCAGAGCAGT
LOC_Os06g45340
Os.47784.1.S1_at--277--1371Chr06:27401607..27401631 (25 bp)
AGAGCAGTCGGATGATCTCTCCCTG
LOC_Os06g45340
Os.47784.1.S1_at--304--9511Chr06:27401590..27401614 (25 bp)
TCTCCCTGCAGATTTGGTTTCTTGT
LOC_Os06g45340
Os.47784.1.S1_at--832--10151Chr06:27401532..27401556 (25 bp)
TATCGATACCGAGTTGAGAGTTTCA
LOC_Os06g45340
Os.47784.1.S1_at--109--6831Chr06:27401513..27401537 (25 bp)
GTTTCAGACTGAGAACATTTGCAGA
LOC_Os06g45340
Os.47784.1.S1_at--623--5091Chr06:27401476..27401500 (25 bp)
GCACGATCGTGGTCTACGGGTTTGA
LOC_Os06g45340
Target Sequence 
GCAAGGGCAGCTCATCAAGGCGCATTACACCGGGAGGCTGGAGGACGGCACGGTGTTCGACAGCAGCTACAAGCGCGGGA
AGCCGCTCACCTTCCGCGTCGGCGTCGGCGAGGTGATCAAAGGATGGGACCAGGGCATAGTGGGCGGCGAAGGGATCCCG
CCGATGCTCGCCGGTGGAAAGAGGTCGCTGAGGCTGCCGCCGGAGCTGGCCTACGGCGCNAGAGGAGCCGGGTGCAGAGG
CTGGGAGCCCACCTCCTGCGTCATCCCGCCCAACTCCACTCTCCTCTTCGACGTCGAGTACGTCGGCAGAGCAGTCGGAT
GATCTCTCCCTGCAGATTTGGTTTCTTGTGTTGATTGATGTATGCAGAATGTTCAGAGTATATATCGATACCGAGTTGAG
AGTTTCAGACTGAGAACATTTGCAGAGAGATTNAAGCAGCACGATCGTGGTCTACGGGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis