Browse Element(s) Details


OsAffx.5113.1.S1_at

Description tigr:9634.m04396
TID=OsAffx.5113.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SBP domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4531010/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45280Os.4929.1.S1_at11/116+27362819..27368187Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g45290NANA6+27376785..27377475Pollen allergen family protein, expressed
LOC_Os06g45300Os.11751.1.S1_a_at11/116+27383308..27385860serine/threonine protein kinase, putative, expressed
LOC_Os06g45310OsAffx.5113.1.S1_at10/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45310Os.51367.1.S1_x_at1/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45310OsAffx.2442.1.S1_x_at1/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45320OsAffx.15935.1.S1_at11/116+27395212..27395879hypothetical protein
LOC_Os06g45320OsAffx.15935.1.S1_x_at11/116+27395212..27395879hypothetical protein
LOC_Os06g45330Os.17695.1.S1_at9/116+27396477..27399413Endonuclease V, putative, expressed
LOC_Os06g45340Os.47784.1.S1_at11/116+27401469..27402749FK506-binding protein, putative, expressed
LOC_Os06g45350Os.34343.1.S2_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.34343.1.S1_a_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.49575.1.S1_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.34343.1.S2_s_at11/116+27411681..27416604protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5113.1.S1_at--218--2471NONE
AACACTACCGCGATCACTGTTTGAT
NONE
OsAffx.5113.1.S1_at--1061--6451Chr06:27388374..27388398 (25 bp)
GATAATAACGCTCCACTTAACCATG
LOC_Os06g45310
OsAffx.5113.1.S1_at--819--10491Chr06:27388358..27388382 (25 bp)
TTAACCATGCAAACACCACTTCAAG
LOC_Os06g45310
OsAffx.5113.1.S1_at--793--10671Chr06:27388333..27388357 (25 bp)
TTCCTCGTGGACATCTGACTTACAG
LOC_Os06g45310
OsAffx.5113.1.S1_at--385--9871Chr06:27388313..27388337 (25 bp)
TACAGCTCTCCCAAGTGATGGACAT
LOC_Os06g45310
OsAffx.5113.1.S1_at--414--631Chr06:27388235..27388259 (25 bp)
ATGCTTTGCCAACTCTTTGTCATGA
LOC_Os06g45310
OsAffx.5113.1.S1_at--359--1711Chr06:27387092..27387116 (25 bp)
ACCAAACATCTTCTATCATCCAATT
LOC_Os06g45310
OsAffx.5113.1.S1_at--857--2071Chr06:27387045..27387069 (25 bp)
ACATTGCCCAGTGTACCAAGCGAAG
LOC_Os06g45310
OsAffx.5113.1.S1_at--928--5851Chr06:27386973..27386997 (25 bp)
GAGCCTCAGGTGTTTCAGTTCACAA
LOC_Os06g45310
OsAffx.5113.1.S1_at--752--2471Chr06:27386937..27386961 (25 bp)
AACACTGTGTTTCCGGATCTAGAGC
LOC_Os06g45310
OsAffx.5113.1.S1_at--14--1371Chr06:27386917..27386941 (25 bp)
AGAGCGGATCAAACCTTCCTACGAG
LOC_Os06g45310
Target Sequence 
AACACTACCGCGATCACTGTTTGATGATAGGCAGCAAATAAGTTTCGCATGGGATAATAACGCTCCACTTAACCATGCAA
ACACCACTTCAAGTTCCTCGTGGACATCTGACTTACAGCTCTCCCAAGTGATGGACATAAGCAAAAGGTCACGAAAAGCT
GGGGCAGACAGTGCAAATATCCGTTTGTCAAATGCTTTGCCAACTCTTTGTCATGACACAAATGAGCTCTTGCCAATAAA
AGGTGCAGATGCATCTGAAACTGCTTCAAAACTAGATGGAGCACTAGATGTTCAGCGTGCTCTCTCTCTTCTGTCAGCTA
GTTCAAGGGGTTTGACTGACCCCGGACACCAAACATCTTCTATCATCCAATTTACGAATTCGAACCAAAACAGCACATTG
CCCAGTGTACCAAGCGAAGGAAACTCTAATGTACCCTTTTGGGTTGATGGACAACATCAAGCAGTAGAGCCTCAGGTGTT
TCAGTTCACAATGGACACCGGTAACACTGTGTTTCCGGATCTAGAGCGGATCAAACCTTCCTACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis