Browse Element(s) Details


Os.11751.1.S1_a_at

Description gb:AY206984.1
DB_XREF= gi:28864538
GEN=DPK4
TID=Os.11751.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11751 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) serinethreonine protein kinase (DPK4) mRNA, complete cds.
PROD=serinethreonine protein kinase
FL= gb:AY224431.1 gb:AK121201.1 gb:AK112080.1 gb:AY206984.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4530011/11serine/threonine protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45270NANA6+27354859..27361014transposon protein, putative, unclassified
LOC_Os06g45280Os.4929.1.S1_at11/116+27362819..27368187Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g45290NANA6+27376785..27377475Pollen allergen family protein, expressed
LOC_Os06g45300Os.11751.1.S1_a_at11/116+27383308..27385860serine/threonine protein kinase, putative, expressed
LOC_Os06g45310OsAffx.5113.1.S1_at10/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45310Os.51367.1.S1_x_at1/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45310OsAffx.2442.1.S1_x_at1/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45320OsAffx.15935.1.S1_at11/116+27395212..27395879hypothetical protein
LOC_Os06g45320OsAffx.15935.1.S1_x_at11/116+27395212..27395879hypothetical protein
LOC_Os06g45330Os.17695.1.S1_at9/116+27396477..27399413Endonuclease V, putative, expressed
LOC_Os06g45340Os.47784.1.S1_at11/116+27401469..27402749FK506-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11751.1.S1_a_at--512--1011Chr06:27385175..27385199 (25 bp)
AGGATTGTGTGGATTCTCTGAGCAA
LOC_Os06g45300
Os.11751.1.S1_a_at--1092--1271Chr06:27385199..27385223 (25 bp)
AGATCATGACTTGCTGTTGGGACGC
LOC_Os06g45300
Os.11751.1.S1_a_at--305--4651Chr06:27385211..27385235 (25 bp)
GCTGTTGGGACGCAAACCCTGAAGT
LOC_Os06g45300
Os.11751.1.S1_a_at--121--2831Chr06:27385232..27385256 (25 bp)
AAGTTCGCCCATCATTTGCCGAGAT
LOC_Os06g45300
Os.11751.1.S1_a_at--204--10711Chr06:27385247..27385271 (25 bp)
TTGCCGAGATCGTTGTCATGCTTGA
LOC_Os06g45300
Os.11751.1.S1_a_at--560--5971Chr06:27385293..27385317 (25 bp)
GAGAAATGTCCGCAGGGCACGTTTC
LOC_Os06g45300
Os.11751.1.S1_a_at--1076--8131Chr06:27385399..27385423 (25 bp)
GGACACCATGATATCGGTCGCGTTT
LOC_Os06g45300
Os.11751.1.S1_a_at--240--6511Chr06:27385431..27385455 (25 bp)
GATATGGAAGTCTCATCCCTGGCCT
LOC_Os06g45300
Os.11751.1.S1_a_at--546--1671Chr06:27385531..27385555 (25 bp)
AGCCGTGTTATGTAATTCTCCGAAA
LOC_Os06g45300
Os.11751.1.S1_a_at--255--6451Chr06:27385597..27385621 (25 bp)
GATCAGCAGCTGTTGTGTGTTCTTT
LOC_Os06g45300
Os.11751.1.S1_a_at--626--6731Chr06:27385615..27385639 (25 bp)
GTTCTTTGTCTGAAGCGTCGACCTA
LOC_Os06g45300
Target Sequence 
AGGATTGTGTGGATTCTCTGAGCAAGATCATGACTTGCTGTTGGGACGCAAACCCTGAAGTTCGCCCATCATTTGCCGAG
ATCGTTGTCATGCTTGAGAATGCCGAGATAGAGGTTATGAGAAATGTCCGCAGGGCACGTTTCCGCTGTTGTATTGCGGN
GCCAATGACCACAGACTGAAACTAATGCAGGATAGAGTACAGAAAAGAAAAAAGAAAAGAGAGAGGACACCATGATATCG
GTCGCGTTTGCGTGCCGATATGGAAGTCTCATCCCTGGCCTTCAAGGTTTAAAATTGCTGATTTCTACTTTATCAAATAT
GGATGGTACCTTGTATGATTGTATATCTTAGCAAAGAGCCGTGTTATGTAATTCTCCGAAATGAGCTATCTTGTGAAATA
ATAGCAGCTGTATTTGCTGGTTGATCAGCAGCTGTTGTGTGTTCTTTGTCTGAAGCGTCGACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11751.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis