Browse Element(s) Details


Os.17695.1.S1_at

Description gb:AK100787.1
DB_XREF= gi:32985996
TID=Os.17695.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023120P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120P09, full insert sequence.
FL= gb:AK100787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g453309/11Endonuclease V, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45290NANA6+27376785..27377475Pollen allergen family protein, expressed
LOC_Os06g45300Os.11751.1.S1_a_at11/116+27383308..27385860serine/threonine protein kinase, putative, expressed
LOC_Os06g45310OsAffx.5113.1.S1_at10/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45310Os.51367.1.S1_x_at1/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45310OsAffx.2442.1.S1_x_at1/116+27386884..27390193SBP domain containing protein, expressed
LOC_Os06g45320OsAffx.15935.1.S1_at11/116+27395212..27395879hypothetical protein
LOC_Os06g45320OsAffx.15935.1.S1_x_at11/116+27395212..27395879hypothetical protein
LOC_Os06g45330Os.17695.1.S1_at9/116+27396477..27399413Endonuclease V, putative, expressed
LOC_Os06g45340Os.47784.1.S1_at11/116+27401469..27402749FK506-binding protein, putative, expressed
LOC_Os06g45350Os.34343.1.S2_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.34343.1.S1_a_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.49575.1.S1_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45350Os.34343.1.S2_s_at11/116+27411681..27416604protein kinase, putative, expressed
LOC_Os06g45360Os.51301.1.S1_at11/116+27418371..27426848metallopeptidase family M24 containing protein, expressed
LOC_Os06g45360Os.51301.1.S1_x_at11/116+27418371..27426848metallopeptidase family M24 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004519molecular_functionendonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17695.1.S1_at--477--3031Chr06:27397250..27397274 (25 bp)
AATGCCCCAGCTGCACCATGTGGAT
LOC_Os06g45330
Os.17695.1.S1_at--294--671Chr06:27396680..27396704 (25 bp)
ATGAAGTAACTTTTCCGCAGCTCTT
LOC_Os06g45330
Os.17695.1.S1_at--148--9291Chr06:27396667..27396691 (25 bp)
TCCGCAGCTCTTTCTAATCGTAATA
LOC_Os06g45330
Os.17695.1.S1_at--1120--9731NONE
TAATAGATTGCACACTTGCGCCGTC
NONE
Os.17695.1.S1_at--958--7751Chr06:27396589..27396613 (25 bp)
GGTGATTGTCACTTGTCAGGTCAGT
LOC_Os06g45330
Os.17695.1.S1_at--740--7111Chr06:27396575..27396599 (25 bp)
GTCAGGTCAGTGTTGTTTGTAAAAT
LOC_Os06g45330
Os.17695.1.S1_at--532--3091Chr06:27396553..27396577 (25 bp)
AATAGACTGCAGGTCACCTTTGAAC
LOC_Os06g45330
Os.17695.1.S1_at--397--7091Chr06:27396540..27396565 (25 bp)
GTCACCTTTGAACATCTGAAATCTG
LOC_Os06g45330
Os.17695.1.S1_at--42--491Chr06:27396520..27396544 (25 bp)
ATCTGTTCAGCTGTTGATGTCCGCA
LOC_Os06g45330
Os.17695.1.S1_at--606--6271Chr06:27396505..27396529 (25 bp)
GATGTCCGCACACTTGTTAGCTAAT
LOC_Os06g45330
Os.17695.1.S1_at--770--3071Chr06:27396476..27396502 (25 bp)
AATCAAGATTTCATTTACGACTGCA
NONE
Target Sequence 
AATGCCCCAGCTGCACCATGTGGATGGCCTTAACCAATCTGAATTGAGAAGACAATTAGAAGCAAAAGAAAACTGCAACA
AGGAGTTAATTTTATTGACTGGACANNNTNNNANNNNATGNNNNNNNNCAATGNGCTCCTGCCCTNGTTTGTCGAAGCCG
ATCTACATCTCAGTTGGGCATCGCATTTCACTTGACTCAGCCATTGGGATAGTGAAGTTCTGTAGTAATTATCGCATTCC
CGAGCCCATTCGCCAGGCTGATATAAGATCANAAGGTGTTCCTTCAAAAGCNCCNNAAACTTGAAGAGTAATAACAAGAT
TGAAATGGGAGTTTTATCTTCTACCTGAGTCAAATTTTCCACAGCATGAAGTAACTTTTCCGCAGCTCTTTCTAATCGTA
ATAGATTGCACACTTGCGCCGTCGTTTTCTTTTTCTTTTCCTTTTTTTGTACATGAGGGTGATTGTCACTTGTCAGGTCA
GTGTTGTTTGTAAAATAGACTGCAGGTCACCTTTGAACATCTGAAATCTGTTCAGCTGTTGATGTCCGCACACTTGTTAG
CTAATTTAATCAAGATTTCATTTACGACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis