Browse Element(s) Details


OsAffx.16488.1.S1_at

Description tigr:9635.m02919
TID=OsAffx.16488.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2993011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29910NANA7+17601919..17603393hypothetical protein
LOC_Os07g29920OsAffx.16487.1.S1_at11/117+17609713..17610284hypothetical protein
LOC_Os07g29920Os.45902.1.A1_at6/117+17609713..17610284hypothetical protein
LOC_Os07g29920Os.45902.1.A1_x_at3/117+17609713..17610284hypothetical protein
LOC_Os07g29930OsAffx.16488.1.S1_at11/117+17618561..17619638expressed protein
LOC_Os07g29940OsAffx.5481.1.S1_at11/117+17625538..17627019hypothetical protein
LOC_Os07g29950OsAffx.28666.1.S1_x_at11/117+17633468..17634329hypothetical protein
LOC_Os07g29950OsAffx.28666.1.S1_at11/117+17633468..17634329hypothetical protein
LOC_Os07g29960OsAffx.28116.1.S1_s_at1/117+17639029..17641558Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16488.1.S1_at--79--1771Chr07:17618643..17618667 (25 bp)
ACCTGAGAATGCACAACAACCGTGG
LOC_Os07g29930
OsAffx.16488.1.S1_at--976--4631Chr07:17618675..17618699 (25 bp)
GCGTTGCACCATGCGGTCCGTGCAG
LOC_Os07g29930
OsAffx.16488.1.S1_at--442--2211Chr07:17618715..17618739 (25 bp)
ACAACGAGGACGATAAGCAGCTGGC
LOC_Os07g29930
OsAffx.16488.1.S1_at--67--8891Chr07:17618760..17618784 (25 bp)
TGATGGCCGCCGATCCACAGCTGGC
LOC_Os07g29930
OsAffx.16488.1.S1_at--567--4171Chr07:17618785..17618809 (25 bp)
CGCCATCCAACACCCGAATGAGAAG
LOC_Os07g29930
OsAffx.16488.1.S1_at--773--8891Chr07:17618803..17618827 (25 bp)
TGAGAAGGCTGCTTCCCCATTGTAC
LOC_Os07g29930
OsAffx.16488.1.S1_at--741--3911Chr07:17618828..17618852 (25 bp)
CTGGCCATCTCACTGGGTGAAATTG
LOC_Os07g29930
OsAffx.16488.1.S1_at--231--9671Chr07:17618837..17618861 (25 bp)
TCACTGGGTGAAATTGGCATTGCAA
LOC_Os07g29930
OsAffx.16488.1.S1_at--223--8291Chr07:17618852..17618876 (25 bp)
GGCATTGCAAAGCATCTGTTCGACA
LOC_Os07g29930
OsAffx.16488.1.S1_at--331--2391Chr07:17618877..17618901 (25 bp)
AAACTGAAGGCGAGCTGTCCTACTC
LOC_Os07g29930
OsAffx.16488.1.S1_at--743--9271Chr07:17618900..17618924 (25 bp)
TCCGGACCAGATGGACGGAACGTCT
LOC_Os07g29930
Target Sequence 
ACCTGAGAATGCACAACAACCGTGGGGAGACCGCGTTGCACCATGCGGTCCGTGCAGCTGCTGCTGCTGCCGACAACGAG
GACGATAAGCAGCTGGCCCTGGACTGCATCGACCAGCTGATGGCCGCCGATCCACAGCTGGCCGCCATCCAACACCCGAA
TGAGAAGGCTGCTTCCCCATTGTACCTGGCCATCTCACTGGGTGAAATTGGCATTGCAAAGCATCTGTTCGACAAAACTG
AAGGCGAGCTGTCCTACTCCGGACCAGATGGACGGAACGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis