Browse Element(s) Details


OsAffx.5481.1.S1_at

Description tigr:9635.m02920
TID=OsAffx.5481.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2994011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29910NANA7+17601919..17603393hypothetical protein
LOC_Os07g29920OsAffx.16487.1.S1_at11/117+17609713..17610284hypothetical protein
LOC_Os07g29920Os.45902.1.A1_at6/117+17609713..17610284hypothetical protein
LOC_Os07g29920Os.45902.1.A1_x_at3/117+17609713..17610284hypothetical protein
LOC_Os07g29930OsAffx.16488.1.S1_at11/117+17618561..17619638expressed protein
LOC_Os07g29940OsAffx.5481.1.S1_at11/117+17625538..17627019hypothetical protein
LOC_Os07g29950OsAffx.28666.1.S1_x_at11/117+17633468..17634329hypothetical protein
LOC_Os07g29950OsAffx.28666.1.S1_at11/117+17633468..17634329hypothetical protein
LOC_Os07g29960OsAffx.28116.1.S1_s_at1/117+17639029..17641558Cytochrome P450 family protein, expressed
LOC_Os07g29970OsAffx.5482.1.S1_at11/117+17651310..17651802hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5481.1.S1_at--49--5811Chr07:17626603..17626627 (25 bp)
GACGCTCTAGCATTCGTTTGCTATT
LOC_Os07g29940
OsAffx.5481.1.S1_at--491--6851Chr07:17626618..17626642 (25 bp)
GTTTGCTATTTCATGGCTACGTCCG
LOC_Os07g29940
OsAffx.5481.1.S1_at--508--7691Chr07:17626658..17626682 (25 bp)
GGGTGCCTGCTTATAAACTCGAGGT
LOC_Os07g29940
OsAffx.5481.1.S1_at--514--4471Chr07:17626685..17626709 (25 bp)
GCCTCCGCCACATTAATTTTGCATA
LOC_Os07g29940
OsAffx.5481.1.S1_at--1126--9971Chr07:17626751..17626775 (25 bp)
TAGCTTTGGGACTCTACGTGGTGCT
LOC_Os07g29940
OsAffx.5481.1.S1_at--473--531Chr07:17626810..17626834 (25 bp)
ATCGCTGCCGCGATGGTCATGCTTG
LOC_Os07g29940
OsAffx.5481.1.S1_at--1084--10731Chr07:17626832..17626856 (25 bp)
TTGCACTTCTGCTCAGCAAGGCATC
LOC_Os07g29940
OsAffx.5481.1.S1_at--513--4971Chr07:17626852..17626876 (25 bp)
GCATCAGAAGGCATCGAGTCTCTCT
LOC_Os07g29940
OsAffx.5481.1.S1_at--125--5511Chr07:17626895..17626919 (25 bp)
GAAACCGGAAGCTGTCAATTCGAGA
LOC_Os07g29940
OsAffx.5481.1.S1_at--1146--91Chr07:17626912..17626936 (25 bp)
ATTCGAGACTCTGTGGTAGGCTTCA
LOC_Os07g29940
OsAffx.5481.1.S1_at--1106--2591Chr07:17626952..17626976 (25 bp)
AACGCTATTGGTCCTTCATCCTAAT
LOC_Os07g29940
Target Sequence 
GACGCTCTAGCATTCGTTTGCTATTTCATGGCTACGTCCGTCCTGCTCTATGCCGGGGTGCCTGCTTATAAACTCGAGGT
CCGCCTCCGCCACATTAATTTTGCATATAGCCTGATGATGAATTCTGGAAGAAGCTTGGCGGCCGCTGTAGCTTTGGGAC
TCTACGTGGTGCTGCTTCCACCGGTTGGCCGCACCATTGCGATCGCGATCGCTGCCGCGATGGTCATGCTTGCACTTCTG
CTCAGCAAGGCATCAGAAGGCATCGAGTCTCTCTTCGGCATTGCTATTGCAAGAAACCGGAAGCTGTCAATTCGAGACTC
TGTGGTAGGCTTCACTATATATGTGGGGGAACGCTATTGGTCCTTCATCCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis