Browse Element(s) Details


OsAffx.16487.1.S1_at

Description tigr:9635.m02918
TID=OsAffx.16487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2992011/11hypothetical protein
LOC_Os11g360601/11THUMP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29880NANA7+17583906..17587334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g29890OsAffx.16485.1.S1_at11/117+17587911..17589521hypothetical protein
LOC_Os07g29890OsAffx.27201.1.S1_at1/117+17587911..17589521hypothetical protein
LOC_Os07g29900NANA7+17592645..17593058retrotransposon protein, putative, unclassified
LOC_Os07g29910NANA7+17601919..17603393hypothetical protein
LOC_Os07g29920OsAffx.16487.1.S1_at11/117+17609713..17610284hypothetical protein
LOC_Os07g29920Os.45902.1.A1_at6/117+17609713..17610284hypothetical protein
LOC_Os07g29920Os.45902.1.A1_x_at3/117+17609713..17610284hypothetical protein
LOC_Os07g29930OsAffx.16488.1.S1_at11/117+17618561..17619638expressed protein
LOC_Os07g29940OsAffx.5481.1.S1_at11/117+17625538..17627019hypothetical protein
LOC_Os07g29950OsAffx.28666.1.S1_x_at11/117+17633468..17634329hypothetical protein
LOC_Os07g29950OsAffx.28666.1.S1_at11/117+17633468..17634329hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16487.1.S1_at--915--3791Chr07:17610230..17610254 (25 bp)
CTCGCTGCAACGACAGCTAAGCCAA
LOC_Os07g29920
OsAffx.16487.1.S1_at--42--9031Chr07:17610225..17610249 (25 bp)
TGCAACGACAGCTAAGCCAAGAGCT
LOC_Os07g29920
OsAffx.16487.1.S1_at--1101--5631Chr07:17610219..17610243 (25 bp)
GACAGCTAAGCCAAGAGCTATCATA
LOC_Os07g29920
OsAffx.16487.1.S1_at--211--4831Chr07:17610215..17610239 (25 bp)
GCTAAGCCAAGAGCTATCATAAGCA
LOC_Os07g29920
OsAffx.16487.1.S1_at--535--4391Chr07:17610210..17610234 (25 bp)
GCCAAGAGCTATCATAAGCATCCAT
LOC_Os07g29920
OsAffx.16487.1.S1_at--1025--5911Chr07:17610205..17610229 (25 bp)
GAGCTATCATAAGCATCCATGCCAA
LOC_Os07g29920
OsAffx.16487.1.S1_at--414--4871Chr07:17610203..17610227 (25 bp)
GCTATCATAAGCATCCATGCCAATT
LOC_Os07g29920
OsAffx.16487.1.S1_at--618--2714Chr11:20692482..20692501 (20 bp)
AAGCATCCATGCCAATTTTATATGG
LOC_Os11g36060
OsAffx.16487.1.S1_at--320--4991Chr07:17610196..17610217 (22 bp)
GCATCCATGCCAATTTTATATGGTT
LOC_Os07g29920
OsAffx.16487.1.S1_at--320--9211Chr07:17610058..17610210 (25 bp)
TGCCAATTTTATATGGTTTGCTGTT
LOC_Os07g29920
OsAffx.16487.1.S1_at--113--6132Chr11:14858206..14858225 (20 bp)
GAGGTTGCTGGTCAGACCGGGTGGA
NONE
Target Sequence 
CTCGCTGCAACGACAGCTAAGCCAAGAGCTATCATAAGCATCCATGCCAATTTTATATGGTTTGCTGTTTTGTCGGACCG
GTCAGACCGGGTGGAGGTTGCTGGTCAGACCGGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis