Browse Element(s) Details


OsAffx.16485.1.S1_at

Description tigr:9635.m02915
TID=OsAffx.16485.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2989011/11hypothetical protein
LOC_Os11g140801/11D8Ertd354e protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29850Os.47463.1.S1_x_at5/117+17554009..17563431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29850Os.14491.2.S1_x_at4/117+17554009..17563431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29860OsAffx.16484.1.S1_at10/117+17567816..17570831hypothetical protein
LOC_Os07g29860OsAffx.20021.1.S1_at1/117+17567816..17570831hypothetical protein
LOC_Os07g29870NANA7+17577163..17578867retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g29880NANA7+17583906..17587334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g29890OsAffx.16485.1.S1_at11/117+17587911..17589521hypothetical protein
LOC_Os07g29890OsAffx.27201.1.S1_at1/117+17587911..17589521hypothetical protein
LOC_Os07g29900NANA7+17592645..17593058retrotransposon protein, putative, unclassified
LOC_Os07g29910NANA7+17601919..17603393hypothetical protein
LOC_Os07g29920OsAffx.16487.1.S1_at11/117+17609713..17610284hypothetical protein
LOC_Os07g29920Os.45902.1.A1_at6/117+17609713..17610284hypothetical protein
LOC_Os07g29920Os.45902.1.A1_x_at3/117+17609713..17610284hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16485.1.S1_at--650--1071Chr07:17588455..17588479 (25 bp)
AGGGAGCTGGGCTTTCCGCCACGTC
LOC_Os07g29890
OsAffx.16485.1.S1_at--423--3351Chr07:17588436..17588460 (25 bp)
CACGTCGGGCACAACTATGATCTTT
LOC_Os07g29890
OsAffx.16485.1.S1_at--762--10111Chr07:17588421..17588445 (25 bp)
TATGATCTTTGCCACAGCACCAGCT
LOC_Os07g29890
OsAffx.16485.1.S1_at--928--8791Chr07:17588299..17588323 (25 bp)
TGTTCCCCAGGGTCAGCACGGTGCT
LOC_Os07g29890
OsAffx.16485.1.S1_at--258--1511Chr07:17588285..17588309 (25 bp)
AGCACGGTGCTTGGAGTTGCACCAC
LOC_Os07g29890
OsAffx.16485.1.S1_at--949--1312Chr11:7829674..7829875 (25 bp)
AGAGGCATTCACCACGCTAGGCGGT
LOC_Os11g14080
OsAffx.16485.1.S1_at--1157--8231Chr07:17588174..17588198 (25 bp)
GGCACACTTGGCTCAGGCACTCGGA
LOC_Os07g29890
OsAffx.16485.1.S1_at--1128--10651Chr07:17588148..17588172 (25 bp)
TTCCGCCATTGAGGTGGAGCCGATG
LOC_Os07g29890
OsAffx.16485.1.S1_at--891--1331Chr07:17588098..17588122 (25 bp)
AGAGGGTCATGGAGCTAGTCAAGCA
LOC_Os07g29890
OsAffx.16485.1.S1_at--1054--10051Chr07:17588083..17588107 (25 bp)
TAGTCAAGCAGATACCGCCACTGAC
LOC_Os07g29890
OsAffx.16485.1.S1_at--450--1991Chr07:17587960..17587984 (25 bp)
ACTCCACACCGGTTCTGATCGGCAA
LOC_Os07g29890
Target Sequence 
AGGGAGCTGGGCTTTCCGCCACGTCGGGCACAACTATGATCTTTGCCACAGCACCAGCTCCAGTCTCTACCCCGACCCCA
GCACTCCCCAGGAGCGGCACGGTGCTAGGAGCTGCACCACCACTGCCACTGCCGCTGCCCCTACCCCCTGCTCCAGTGTT
CCCCAGGGTCAGCACGGTGCTTGGAGTTGCACCACCACCACCACTGCCATCACCCCCGCCTTCGACTCAGCACGTTTCAC
CGACCGTGCCCGCTGCAGAGGCATTCACCACGCTAGGCGGTGGCACACTTGGCTCAGGCACTCGGACTTCCGCCATTGAG
GTGGAGCCGATGGTTGAGGAGGAGGAGGACCCCGAGGAGAGGGTCATGGAGCTAGTCAAGCAGATACCGCCACTGACTCA
GCCACCTCCAGTCGAGCACTTTGGCGGTAGGGGGCGTAGGTGCAGCGGTGACCCGGAGCCCTCCGGGAAGCGCCGCCGCG
GCCGCCCCCACCGCGACTCCACACCGGTTCTGATCGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis