Browse Element(s) Details


OsAffx.16484.1.S1_at

Description tigr:9635.m02912
TID=OsAffx.16484.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2986010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29840Os.41695.5.S1_x_at3/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840OsAffx.29376.1.S1_x_at3/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.3.S1_x_at2/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.4.S1_x_at2/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.2.S1_x_at1/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.51891.1.S1_at1/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29850Os.47463.1.S1_x_at5/117+17554009..17563431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29850Os.14491.2.S1_x_at4/117+17554009..17563431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29860OsAffx.16484.1.S1_at10/117+17567816..17570831hypothetical protein
LOC_Os07g29860OsAffx.20021.1.S1_at1/117+17567816..17570831hypothetical protein
LOC_Os07g29870NANA7+17577163..17578867retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g29880NANA7+17583906..17587334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g29890OsAffx.16485.1.S1_at11/117+17587911..17589521hypothetical protein
LOC_Os07g29890OsAffx.27201.1.S1_at1/117+17587911..17589521hypothetical protein
LOC_Os07g29900NANA7+17592645..17593058retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16484.1.S1_at--214--10271Chr07:17568272..17568296 (25 bp)
TTTGATGTGATTCGCCATGTCTGCA
LOC_Os07g29860
OsAffx.16484.1.S1_at--276--771Chr07:17568288..17568312 (25 bp)
ATGTCTGCACTTCGCGAGGGTTGTC
LOC_Os07g29860
OsAffx.16484.1.S1_at--709--6131Chr07:17568303..17568327 (25 bp)
GAGGGTTGTCATCGATCCTGAATCT
LOC_Os07g29860
OsAffx.16484.1.S1_at--540--8511NONE
TGGAATTCAAGCATACGCATACGAA
NONE
OsAffx.16484.1.S1_at--75--151Chr07:17570423..17570447 (25 bp)
ATTACTCTTGAAACTGGGAGCTCCA
LOC_Os07g29860
OsAffx.16484.1.S1_at--290--2571Chr07:17570434..17570458 (25 bp)
AACTGGGAGCTCCACTTGGTGAAAG
LOC_Os07g29860
OsAffx.16484.1.S1_at--763--1331Chr07:17570460..17570484 (25 bp)
AGAGGTGACCTCTTCGATGAAAAGC
LOC_Os07g29860
OsAffx.16484.1.S1_at--327--10291Chr07:17570570..17570594 (25 bp)
TTTCTCCGTCCTTATTACAACAGTG
LOC_Os07g29860
OsAffx.16484.1.S1_at--556--10311Chr07:17570706..17570730 (25 bp)
TTTCTCCTCGCCGATGTCTGGCATT
LOC_Os07g29860
OsAffx.16484.1.S1_at--683--7171Chr07:17570721..17570745 (25 bp)
GTCTGGCATTCATCTGTTCTTTCGT
LOC_Os07g29860
OsAffx.16484.1.S1_at--644--10551Chr07:17570737..17570761 (25 bp)
TTCTTTCGTCGCTACGGCCAAACTG
LOC_Os07g29860
Target Sequence 
TTTGATGTGATTCGCCATGTCTGCACTTCGCGAGGGTTGTCATCGATCCTGAATCTGCAGGACGACAACGGGGTACGATT
GGATATGCGGAATAAGGAGGGCATGATGCCCGCCGATGTTTCATGGAGCATGATGCCTTTAAAGACTTATTATGCATGGA
ATTCAAGCATACGCATACGAAAATTACTCTTGAAACTGGGAGCTCCACTTGGTGAAAGTAGAGGTGACCTCTTCGATGAA
AAGCACAATAGAATCATCGGAGAAAAATCTAAATGGGACATGGAAAAGATGTCGGAGAATGTAACAGCTGCAGCACAAGT
CTTGGCCCTTTTCTCCGTCCTTATTACAACAGTGACATTTGCGTCGGCTTTCACGCTGCCCGGTGGCTACCGATCAGCCG
GCGACGATGGTGGTGCTGCTGGGACGCCGGTGCTTGCTAGGCGTGGGAGCTACGCTTTCGATGCGTTTCTCCTCGCCGAT
GTCTGGCATTCATCTGTTCTTTCGTCGCTACGGCCAAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis