Browse Element(s) Details


Os.51891.1.S1_at

Description gb:AK064202.1
DB_XREF= gi:32974220
TID=Os.51891.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-D12, full insert sequence.
FL= gb:AK064202.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g141502/11early-responsive to dehydration stress protein, putative, expressed
LOC_Os01g490102/11Origin recognition complex subunit 4, putative, expressed
LOC_Os07g298401/11SWIM zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14130Os.48071.2.S1_x_at11/114+7873334..7881698pentatricopeptide, putative, expressed
LOC_Os04g14140OsAffx.13812.1.S1_at1/114+7887072..7888212hypothetical protein
LOC_Os04g14150Os.19038.1.S1_at8/114+7892907..7895093early-responsive to dehydration stress protein, putative, expressed
LOC_Os04g14150Os.51891.1.S1_at2/114+7892907..7895093early-responsive to dehydration stress protein, putative, expressed
LOC_Os04g14160NANA4+7895910..7897526retrotransposon protein, putative, LINE subclass
LOC_Os04g14170NANA4+7914797..7915611retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51891.1.S1_at--1034--10191Chr04:7892215..7892239 (25 bp)
TATATTCTCAAATGCATGGCCTAGC
NONE
Os.51891.1.S1_at--892--1131Chr04:7892291..7892315 (25 bp)
AGTCCAGTTGGATCATTGTGCAAAC
NONE
Os.51891.1.S1_at--115--7352Chr04:7892308..7892332 (25 bp)
GTGCAAACTTTTTTCAGATCAGGCT
NONE
Os.51891.1.S1_at--523--5932Chr04:7892745..7892769 (25 bp)
GAGCATCTGTACATCATAGAGACAT
NONE
Os.51891.1.S1_at--893--10031Chr04:7892761..7892785 (25 bp)
TAGAGACATCCTTTTTCCTGGGTGA
NONE
Os.51891.1.S1_at--635--5211Chr04:7892784..7892808 (25 bp)
GAATTTCACCTAATCTGAGCCATCC
NONE
Os.51891.1.S1_at--590--4432Chr04:7892802..7892826 (25 bp)
GCCATCCTTTTACTTCTATGACTGA
NONE
Os.51891.1.S1_at--1136--671Chr04:7892819..7892843 (25 bp)
ATGACTGAGATCACCTTTTTCTAAT
NONE
Os.51891.1.S1_at--609--332Chr04:7892885..7892909 (25 bp)
ATACTTTTCTCTTCATGTAGCGATG
NONE
Os.51891.1.S1_at--1013--1271Chr04:7892917..7892941 (25 bp)
AGATCGGTACTGAGGACCGGCACCA
LOC_Os04g14150
Os.51891.1.S1_at--669--1771Chr04:7892932..7892956 (25 bp)
ACCGGCACCAGTGGCATCTTATGTA
LOC_Os04g14150
Target Sequence 
TATATTCTCAAATGCATGGCCTAGCCAAAAGGACAATATATCATAATGCACAATTAGTTAGACTTTGTTAACTTGTAGTC
CAGTTGGATCATTGTGCAAACTTTTTTCAGATCAGGCTGAATGGGATGCTACATAGTGATGACAACTGTGCCACGAAGGA
AATTGCGAGGCAACTTTGTTTGGAACATCAGTTATCATTTTCCAAAATGGCTTCTTCAGATGACAACACGGAATTCATGA
TTGACATGTTACGGTCAGTGAAGTGTTAACATGATGAGCATCTGTACATCATAGAGACATCCTTTTTCCTGGGTGAATTT
CACCTAATCTGAGCCATCCTTTTACTTCTATGACTGAGATCACCTTTTTCTAATTAACAACCCTTATACTCAGTTTAGAT
GTGGAGGGAATATACATACTTTTCTCTTCATGTAGCGATGATGAGGAAGATCGGTACTGAGGACCGGCACCAGTGGCATC
TTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis