Browse Element(s) Details


Os.19038.1.S1_at

Description gb:AK065174.1
DB_XREF= gi:32975192
TID=Os.19038.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19038 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002D01, full insert sequence.
FL= gb:AK065174.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g141508/11early-responsive to dehydration stress protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14130Os.48071.2.S1_x_at11/114+7873334..7881698pentatricopeptide, putative, expressed
LOC_Os04g14140OsAffx.13812.1.S1_at1/114+7887072..7888212hypothetical protein
LOC_Os04g14150Os.19038.1.S1_at8/114+7892907..7895093early-responsive to dehydration stress protein, putative, expressed
LOC_Os04g14150Os.51891.1.S1_at2/114+7892907..7895093early-responsive to dehydration stress protein, putative, expressed
LOC_Os04g14160NANA4+7895910..7897526retrotransposon protein, putative, LINE subclass
LOC_Os04g14170NANA4+7914797..7915611retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19038.1.S1_at--372--5451Chr04:7894492..7894516 (25 bp)
GAACGCCTACTTTCTGGATTCTGTA
LOC_Os04g14150
Os.19038.1.S1_at--79--7931NONE
GGATTCTGTAGCCACCATTGCCAAA
NONE
Os.19038.1.S1_at--966--2911Chr04:7894580..7894604 (25 bp)
AAGGAGAAGGTCCTCATCTGCCAGA
LOC_Os04g14150
Os.19038.1.S1_at--1060--7091Chr04:7894615..7894639 (25 bp)
GTCAGGAAAGAACACCCAGCATTGA
LOC_Os04g14150
Os.19038.1.S1_at--971--8831NONE
TGATAGCCTCACCTTGATCGAACCT
NONE
Os.19038.1.S1_at--3--4111Chr04:7894677..7894701 (25 bp)
CGAACCTGGAGGGATCACAATGTAA
LOC_Os04g14150
Os.19038.1.S1_at--285--9711NONE
TCAAGACAGTGCTCAACCTAAGGCA
NONE
Os.19038.1.S1_at--647--2031Chr04:7894754..7894778 (25 bp)
ACTAGACTTCACACTCTGATACAAG
LOC_Os04g14150
Os.19038.1.S1_at--614--10091Chr04:7894827..7894851 (25 bp)
TAGGATCCAATACTTCCTACTCTCT
LOC_Os04g14150
Os.19038.1.S1_at--402--3771Chr04:7894846..7894870 (25 bp)
CTCTCTGCCAGTTATCACACAATTA
LOC_Os04g14150
Os.19038.1.S1_at--403--1691Chr04:7895001..7895025 (25 bp)
AGCCATAGCTTGTTTCTACGATTGT
LOC_Os04g14150
Target Sequence 
GAACGCCTACTTTCTGGATTCTGTAGCCACCATTGCCAAAGGAATGAGATGGAACTGTGACAAGCATGACACCGAANACA
AGGCAGACAAGGAGAAGGTCCTCATCTGCCAGAAAAAGCTTTGGTCAGGAAAGAACACCCAGCATTGAAAAAAAAAATCA
ATAACTTGATAGCCTCACCTTGATCGAACCTGGAGGGATCACAATGTAAATCTGCTCAACGATTTCAAGACAGTGCTCAA
CCTAAGGCACTTCACCCTCCCACTAGACTTCACACTCTGATACAAGAACNTTCGTATAATGATTAAATTAAATAAAATGA
GCAATACTCCAATATAGGATCCAATACTTCCTACTCTCTGCCAGTTATCACACAATTATTTTTTACAGTTACTAGGGGAC
CAATTAATTAATACCACCAAGAGGCAGCTGTAAGTTATTACTTTTTTTTAGAATGGACAACTGTAAGTTACTTTTATACT
ACTATATAGNATGTTCATTTGTATTAGCCATAGCTTGTTTCTACGATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis