Browse Element(s) Details


Os.48071.2.S1_x_at

Description gb:AK122044.1
DB_XREF= gi:37991690
TID=Os.48071.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013057F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033113M07, full insert sequence.
FL= gb:AK122044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1413011/11pentatricopeptide, putative, expressed
LOC_Os05g2396011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14110Os.53153.1.S1_at7/114+7861816..7862991TRAF-type zinc finger family protein
LOC_Os04g14130Os.48071.2.S1_x_at11/114+7873334..7881698pentatricopeptide, putative, expressed
LOC_Os04g14140OsAffx.13812.1.S1_at1/114+7887072..7888212hypothetical protein
LOC_Os04g14150Os.19038.1.S1_at8/114+7892907..7895093early-responsive to dehydration stress protein, putative, expressed
LOC_Os04g14150Os.51891.1.S1_at2/114+7892907..7895093early-responsive to dehydration stress protein, putative, expressed
LOC_Os04g14160NANA4+7895910..7897526retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48071.2.S1_x_at--121--5132Chr05:13717469..13717493 (25 bp)
GCACAGCATCTTTCTTTGTCGGAGA
LOC_Os05g23960
Os.48071.2.S1_x_at--415--10252Chr05:13717455..13717479 (25 bp)
TTTGTCGGAGATCGATCACACCCAC
LOC_Os05g23960
Os.48071.2.S1_x_at--542--552Chr05:13717429..13717453 (25 bp)
ATCCCCACAAATTTATGCTCTTCTG
LOC_Os05g23960
Os.48071.2.S1_x_at--981--8792Chr05:13717369..13717393 (25 bp)
TGTTCCTGAGACAAACTTCGCATTA
LOC_Os05g23960
Os.48071.2.S1_x_at--117--372Chr05:13717319..13717343 (25 bp)
ATAATCTTCTTGTTGAGCACAGTGA
LOC_Os05g23960
Os.48071.2.S1_x_at--810--2132Chr05:13717301..13717325 (25 bp)
ACAGTGAGAAACTTGCTCTTGCATA
LOC_Os05g23960
Os.48071.2.S1_x_at--740--10732Chr05:13717284..13717307 (24 bp)
TTGCATATGGTCTCCTCACAACTTC
LOC_Os05g23960
Os.48071.2.S1_x_at--169--1772Chr05:13717229..13717253 (25 bp)
ACCTGCGTGTATGTGGTGATTGCCA
LOC_Os05g23960
Os.48071.2.S1_x_at--663--7412Chr05:13717214..13717238 (25 bp)
GTGATTGCCATAGCGCATTCACCTA
LOC_Os05g23960
Os.48071.2.S1_x_at--663--1792Chr05:13717151..13717175 (25 bp)
ACCCCAGTCGTTTTCATCATTTCAA
LOC_Os05g23960
Os.48071.2.S1_x_at--567--3532Chr05:13717118..13717142 (25 bp)
CATGCTCATGTGGTGGCTATTGGTG
LOC_Os05g23960
Target Sequence 
GCACAGCATCTTTCTTTGTCGGAGATCGATCACACCCACTATCCCCACAAATTTATGCTCTTCTGGAGAGTCTAATTGAT
CGCATCAAAGCTATGGGATATGTTCCTGAGACAAACTTCGCATTACATGATGTTGATGAGGAAGAGAAAAATAATCTTCT
TGTTGAGCACAGTGAGAAACTTGCTCTTGCATATGGTCTCCTCACAACTTCCCCTGGTTGCCCAATAAGGATCACAAAGA
ACCTGCGTGTATGTGGTGATTGCCATAGCGCATTCACCTACATTTCCAAGATTGTGGACCATGAGATNGTAGTGCGCGAC
CCCAGTCGTTTTCATCATTTCAAGAATGGTTCATGCTCATGTGGTGGCTATTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48071.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis