Browse Element(s) Details


OsAffx.27201.1.S1_at

Description tigr:9633.m03420
TID=OsAffx.27201.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3709011/11hypothetical protein
LOC_Os07g298901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37050OsAffx.14990.1.S1_at11/115+21567068..21567863Myb-like DNA-binding domain containing protein
LOC_Os05g37060Os.54934.1.S1_at11/115+21570998..21572195Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g37070OsAffx.19542.3.S1_x_at6/115+21578164..21582386retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g37080Os.51783.1.S1_at11/115+21585008..21586543NAC-domain containing protein 90, putative, expressed
LOC_Os05g37090OsAffx.27201.1.S1_at11/115+21592507..21593007hypothetical protein
LOC_Os05g37100OsAffx.27202.1.S1_at11/115+21604260..21606305hypothetical protein
LOC_Os05g37110NANA5+21608394..21608801hypothetical protein
LOC_Os05g37120Os.15248.1.S1_at11/115+21609316..21614639Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os05g37130Os.53494.1.S1_x_at11/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.17542.1.S1_at8/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.9217.1.S1_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.24051.1.S1_x_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27201.1.S1_at--74--511Chr05:21592547..21592571 (25 bp)
ATCGTGGATCGAGGACACCGACGGC
LOC_Os05g37090
OsAffx.27201.1.S1_at--231--3811Chr05:21592590..21592614 (25 bp)
CTCCCGCATGGATGGCTGTAACATA
LOC_Os05g37090
OsAffx.27201.1.S1_at--926--10031Chr05:21592616..21592640 (25 bp)
TAGATTTTTTAGGATACCGTACTCA
LOC_Os05g37090
OsAffx.27201.1.S1_at--65--10091Chr05:21592643..21592667 (25 bp)
TAGGGTATCCCCACAGACTGATTTT
LOC_Os05g37090
OsAffx.27201.1.S1_at--275--3871Chr05:21592660..21592684 (25 bp)
CTGATTTTTCAGGATACCGTACTCA
LOC_Os05g37090
OsAffx.27201.1.S1_at--437--311Chr05:21592673..21592697 (25 bp)
ATACCGTACTCAAATCAGGCATCCC
LOC_Os05g37090
OsAffx.27201.1.S1_at--1155--4972Chr05:21592691..21592715 (25 bp)
GCATCCCCACAGACTTGGTATCAGA
LOC_Os05g37090
OsAffx.27201.1.S1_at--437--5171Chr05:21592716..21592740 (25 bp)
GCAAGTATGTGGGAATACACGGTTT
LOC_Os05g37090
OsAffx.27201.1.S1_at--1034--2171Chr05:21592732..21592756 (25 bp)
ACACGGTTTGAGTATGGTATCCTAA
LOC_Os05g37090
OsAffx.27201.1.S1_at--506--811Chr05:21592745..21592769 (25 bp)
ATGGTATCCTAAAAATGGCGCTGAG
LOC_Os05g37090
OsAffx.27201.1.S1_at--475--5071Chr05:21592935..21592959 (25 bp)
GCAGCGATGGCGAGTCCTAAGCCCT
LOC_Os05g37090
Target Sequence 
ATCGTGGATCGAGGACACCGACGGCGGTGGCGGCTCCCGAACCCTCCCGCATGGATGGCTGTAACATACTAGATTTTTTA
GGATACCGTACTCAAATAGGGTATCCCCACAGACTGATTTTTCAGGATACCGTACTCAAATCAGGCATCCCCACAGACTT
GGTATCAGAGCAAGTATGTGGGAATACACGGTTTGAGTATGGTATCCTAAAAATGGCGCTGAGGATGGCGGTGGCGGCAG
CTCCCAAGACCTCCCACCGCAGATGGCGTCAAGGACGGTGGCGGCGGCGGCTCCCAAGACATCCCGTCGCGGATGGGATC
GAGGATAGCGACGGCGGCGGTGGGTCGCGAGCCCTCCTGCGCGGATGGCGTCGAGGACGGCTGTGGCGGCAGCGATGGCG
AGTCCTAAGCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis