Browse Element(s) Details


Os.15248.1.S1_at

Description gb:CB621506
DB_XREF= gi:29616494
DB_XREF=OSIIEa07G21.r
CLONE=OSIIEa07G21
TID=Os.15248.1
CNT=19
FEA=EST
TIER=ConsEnd
STK=5
UG=Os.15248 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_565651.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3712011/11Sec23/Sec24 trunk domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37080Os.51783.1.S1_at11/115+21585008..21586543NAC-domain containing protein 90, putative, expressed
LOC_Os05g37090OsAffx.27201.1.S1_at11/115+21592507..21593007hypothetical protein
LOC_Os05g37100OsAffx.27202.1.S1_at11/115+21604260..21606305hypothetical protein
LOC_Os05g37110NANA5+21608394..21608801hypothetical protein
LOC_Os05g37120Os.15248.1.S1_at11/115+21609316..21614639Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os05g37130Os.53494.1.S1_x_at11/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.17542.1.S1_at8/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.9217.1.S1_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.24051.1.S1_x_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37140Os.321.1.S1_at11/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37140OsAffx.27204.1.S1_x_at8/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37150Os.5264.1.S1_at11/115+21625298..21628492expressed protein
LOC_Os05g37150OsAffx.27204.1.S1_x_at2/115+21625298..21628492expressed protein
LOC_Os05g37160Os.17765.1.A1_at10/115+21628738..21632462Cell division protein ftsZ, putative, expressed
LOC_Os05g37170Os.23469.1.S1_at10/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37170Os.53949.1.S1_at1/115+21632554..21641305Transcription factor HBP-1b, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15248.1.S1_at--897--9451Chr05:21609988..21610012 (25 bp)
TCTGGATGCATTTACGAACCTTATT
LOC_Os05g37120
Os.15248.1.S1_at--296--51Chr05:21609966..21609990 (25 bp)
ATTGTTTACTATTCACCGTCTGCTG
LOC_Os05g37120
Os.15248.1.S1_at--36--591Chr05:21609727..21609751 (25 bp)
ATCCAGCATTGTTTGAGAGGTATCT
LOC_Os05g37120
Os.15248.1.S1_at--17--6871Chr05:21609654..21609678 (25 bp)
GTTTGTATCGTTCCGTGAGAGCATC
LOC_Os05g37120
Os.15248.1.S1_at--257--4971Chr05:21609634..21609658 (25 bp)
GCATCAGGCATGCTGCAACAGACAT
LOC_Os05g37120
Os.15248.1.S1_at--817--1391Chr05:21609580..21609604 (25 bp)
AGACGTAGCACAATTCAGCTCCAAA
LOC_Os05g37120
Os.15248.1.S1_at--529--3572Chr07:25672419..25672438 (20 bp)
CATAGCCTTCATTCCTTCATATAGA
NONE
Os.15248.1.S1_at--379--6431Chr05:21609474..21609498 (25 bp)
GATCTTCTGGCATCATAGTTGCCTG
LOC_Os05g37120
Os.15248.1.S1_at--936--7171Chr05:21609446..21609470 (25 bp)
GTCTGTGTCACTGTCAGTAGCTTAA
LOC_Os05g37120
Os.15248.1.S1_at--985--6951Chr05:21609430..21609454 (25 bp)
GTAGCTTAACTTTGTGGCATTTCGT
LOC_Os05g37120
Os.15248.1.S1_at--1108--8271Chr05:21609415..21609439 (25 bp)
GGCATTTCGTGTATATCCGGTACCT
LOC_Os05g37120
Target Sequence 
TCTGGATGCATTTACGAACCTTATTGTTTACTATTCACCGTCTGCTGATCCTTCACTTCCTTTNCCTCCACCTCATGACT
GTCTTTTGAGAACCATGNTTAATGAGTTGAAGCAGGGCAGGTGTATAACACCAAAGCTGACATTTATCCATGGAGGACGA
GAAGATCCAGCATTGTTTGAGAGGTATCTTATTGAAGAGCAAGATGTTGACGGTACAGGGTTTACAAGTGGTAAAGGGTT
TGTATCGTTCCGTGAGAGCATCAGGCATGCTGCAACAGACATCATCGAGACAGAAAGTAGTATCTAGTTCAAGACGTAGC
ACAATTCAGCTCCAAAATCATGGAGTAGATTGTATGAAGTCATCATAGCCTTCATTCCTTCATATAGATATAGCCTTGGA
GCAATAAAAGGGGAGGGGATCTTCTGGCATCATAGTTGCCTGTGTGTCTGTGTCACTGTCAGTAGCTTAACTTTGTGGCA
TTTCGTGTATATCCGGTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis