Browse Element(s) Details


Os.23469.1.S1_at

Description gb:AK109520.1
DB_XREF= gi:32994729
TID=Os.23469.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.23469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-G01, full insert sequence.
FL= gb:AK109520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3717010/11Transcription factor HBP-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37110NANA5+21608394..21608801hypothetical protein
LOC_Os05g37120Os.15248.1.S1_at11/115+21609316..21614639Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os05g37130Os.53494.1.S1_x_at11/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.17542.1.S1_at8/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.9217.1.S1_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.24051.1.S1_x_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37140Os.321.1.S1_at11/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37140OsAffx.27204.1.S1_x_at8/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37150Os.5264.1.S1_at11/115+21625298..21628492expressed protein
LOC_Os05g37150OsAffx.27204.1.S1_x_at2/115+21625298..21628492expressed protein
LOC_Os05g37160Os.17765.1.A1_at10/115+21628738..21632462Cell division protein ftsZ, putative, expressed
LOC_Os05g37170Os.23469.1.S1_at10/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37170Os.53949.1.S1_at1/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37180NANA5+21647720..21648037transposon protein, putative, unclassified
LOC_Os05g37190Os.54232.1.S1_at11/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.17417.1.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.29835.1.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.17417.2.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23469.1.S1_at--1086--1851Chr05:21639797..21639821 (25 bp)
ACGACGGCGCAGATGTTGCCAACTA
LOC_Os05g37170
Os.23469.1.S1_at--853--9611Chr05:21639830..21639854 (25 bp)
TCATGGCCCTAGCACTTGGCAGGCT
LOC_Os05g37170
Os.23469.1.S1_at--631--5111Chr05:21639841..21639865 (25 bp)
GCACTTGGCAGGCTTGAGAACCTCG
LOC_Os05g37170
Os.23469.1.S1_at--748--8271Chr05:21639851..21639875 (25 bp)
GGCTTGAGAACCTCGAGAGCTTTTA
LOC_Os05g37170
Os.23469.1.S1_at--19--9131Chr05:21640766..21640790 (25 bp)
TGCGGCGAATTCTCACAACCAGACA
LOC_Os05g37170
Os.23469.1.S1_at--329--2651Chr05:21640782..21640806 (25 bp)
AACCAGACAGACAGCTCGGTGTTTT
LOC_Os05g37170
Os.23469.1.S1_at--1117--2131Chr05:21640788..21640812 (25 bp)
ACAGACAGCTCGGTGTTTTCTTTCC
LOC_Os05g37170
Os.23469.1.S1_at--507--4011NONE
CGTCCTCGCGAAAACTTCATTGCGA
NONE
Os.23469.1.S1_at--868--4591Chr05:21640992..21641012 (21 bp)
GCGAAAACTTCATTGCGACAGAGAA
LOC_Os05g37170
Os.23469.1.S1_at--755--6011Chr05:21641155..21641179 (25 bp)
GAGAGAGCGAATGTAATGTTCTATC
LOC_Os05g37170
Os.23469.1.S1_at--1096--9071Chr05:21641258..21641282 (25 bp)
TGCTATGTTCCAATGGCTCTTGAAT
LOC_Os05g37170
Target Sequence 
ACGACGGCGCAGATGTTGCCAACTACACCGGCCTCATGGCCCTAGCACTTGGCAGGCTTGAGAACCTCGAGAGCTTTTAT
NGTCAGGCTGATAATNTGAGGCNGGAAACGTTGCNCCACNTGCGGCGAATTCTCACAACCAGACAGACAGCTCGGTGTTT
TCTTTCCNTTGGAGAGTATAATNGCCGTNTCCGTGCTCTCAGCTCCCTNTGGGCTTCACGTCCTCGCGAAAACTTCATTG
CGACAGAGAATGTCAGCCCTNCAGGAACTGAATTTCAGGTTATTCAGCNATCTCAGCAAAATCAATTNTCCGGTTTNTGA
GACCTNTTCTCCAGGAGGGTACAAATTNTGCATTTNTGCCNGTAGCAAGGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGC
GAATGTAATGTTCTATCNTTNTGATATTGAGAAAGGAACNTCNCTAGGAAAAAAAAANATGGCAGAAAGTTGGAAACTGG
GGCGGCTCGATCNCNTGCTATGTTCCAATGGCTCTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis