Browse Element(s) Details


Os.53949.1.S1_at

Description gb:AK100980.1
DB_XREF= gi:32986189
TID=Os.53949.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144J04, full insert sequence.
FL= gb:AK100980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3725011/11transposon protein, putative, Mariner sub-class, expressed
LOC_Os05g371701/11Transcription factor HBP-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37210OsAffx.15507.1.S1_at10/1112+22791019..22794011hypothetical protein
LOC_Os12g37210Os.36875.1.A1_at7/1112+22791019..22794011hypothetical protein
LOC_Os12g37210OsAffx.15507.2.S1_x_at3/1112+22791019..22794011hypothetical protein
LOC_Os12g37210OsAffx.15507.2.S1_at1/1112+22791019..22794011hypothetical protein
LOC_Os12g37220NANA12+22802394..22805725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37230NANA12+22807324..22807785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.41934.1.A1_x_at2/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.14491.2.S1_x_at1/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.47463.1.S1_x_at1/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37250Os.53949.1.S1_at11/1112+22815056..22817069transposon protein, putative, Mariner sub-class, expressed
LOC_Os12g37260Os.15171.1.S1_s_at11/1112+22821189..22826640Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37260Os.405.1.S1_a_at11/1112+22821189..22826640Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37260OsAffx.32067.1.S1_x_at3/1112+22821189..22826640Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37270OsAffx.19998.2.S1_at11/1112+22833919..22836477Leucine Rich Repeat family protein
LOC_Os12g37280OsAffx.19998.1.S1_at11/1112+22839331..22844099Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53949.1.S1_at--701--71Chr12:22816486..22816510 (25 bp)
ATTGCCAGCTACAATTCGGCTACAA
LOC_Os12g37250
Os.53949.1.S1_at--944--3151Chr12:22816498..22816522 (25 bp)
AATTCGGCTACAAATTTGCAGCAGA
LOC_Os12g37250
Os.53949.1.S1_at--721--5651Chr12:22816534..22816558 (25 bp)
GACAGGAGCACTAATCTGAAGACTT
LOC_Os12g37250
Os.53949.1.S1_at--65--5371Chr12:22816551..22816575 (25 bp)
GAAGACTTGATTCGCTATAACATGA
LOC_Os12g37250
Os.53949.1.S1_at--1076--6191Chr12:22816577..22816601 (25 bp)
GAGGCATGAGTTTGTGCATACGTGT
LOC_Os12g37250
Os.53949.1.S1_at--804--311Chr12:22816594..22816618 (25 bp)
ATACGTGTGTGCTCGCCTACAGGGA
LOC_Os12g37250
Os.53949.1.S1_at--1068--771Chr12:22816756..22816780 (25 bp)
ATGTGCATACGTGTGAGCGCTCACC
LOC_Os12g37250
Os.53949.1.S1_at--691--8192Chr12:22816913..22816937 (25 bp)
GGAAGGGCAAAAGCGTCAGTTCACA
LOC_Os12g37250
Os.53949.1.S1_at--861--7092Chr12:22816927..22816951 (25 bp)
GTCAGTTCACAGCTTCCTTAATTTC
LOC_Os12g37250
Os.53949.1.S1_at--566--9231Chr12:22816941..22816965 (25 bp)
TCCTTAATTTCTACGAAGCTGTCGG
LOC_Os12g37250
Os.53949.1.S1_at--355--4594Chr12:22816958..22816982 (25 bp)
GCTGTCGGAAACGTCAAATAAAACT
LOC_Os12g37250
Target Sequence 
ATTGCCAGCTACAATTCGGCTACAAATTTGCAGCAGATAACATGAAAAGACAGGAGCACTAATCTGAAGACTTGATTCGC
TATAACATGAAGAGGCATGAGTTTGTGCATACGTGTGTGCTCGCCTACAGGGAGAAGCAGGGTGCTGGCGCCGCTGCACG
CGGGGTGGATGGGGACGGCGCGCTGCTCAGCGGCGGTGGTGGGGGCGGGCTCGCGAAGAGACAGGAGGGAGGCCAGAGAA
GGTGTAGGAAGAGGGGAATGAGAAGGGAGTATGTGCATACGTGTGAGCGCTCACCGGCGGGGGGAAACAGGACGCCGGCG
CCGCTGCCCGTGGGAAGGGGAAGCCGCGGCTGGGGAGGTGGGGAAGAGCGCTGCCGCGGCGCTCGGAGAAGCAGGATGGG
GCGCTGCTGCCGTCACGCGTAGAAGAGGAAGGGCAAAAGCGTCAGTTCACAGCTTCCTTAATTTCTACGAAGCTGTCGGA
AACGTCAAATAAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis