Browse Element(s) Details


OsAffx.19998.2.S1_at

Description tigr:9640.m03615
TID=OsAffx.19998.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3727011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37240Os.41934.1.A1_x_at2/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.14491.2.S1_x_at1/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.47463.1.S1_x_at1/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37250Os.53949.1.S1_at11/1112+22815056..22817069transposon protein, putative, Mariner sub-class, expressed
LOC_Os12g37260Os.15171.1.S1_s_at11/1112+22821189..22826640Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37260Os.405.1.S1_a_at11/1112+22821189..22826640Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37260OsAffx.32067.1.S1_x_at3/1112+22821189..22826640Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37270OsAffx.19998.2.S1_at11/1112+22833919..22836477Leucine Rich Repeat family protein
LOC_Os12g37280OsAffx.19998.1.S1_at11/1112+22839331..22844099Leucine Rich Repeat family protein, expressed
LOC_Os12g37290OsAffx.7820.1.S1_at11/1112+22848639..22852781resistance protein T10rga2-1A, putative
LOC_Os12g37300OsAffx.22848.3.S1_x_at3/1112+22858126..22864084retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19998.2.S1_at--1044--3351Chr12:22834483..22834507 (25 bp)
CACCCACCTGCGCAAATTGGAAGTG
LOC_Os12g37270
OsAffx.19998.2.S1_at--153--2331Chr12:22834432..22834456 (25 bp)
AAAGTTTTTATCTGCCCTTGCCGCT
LOC_Os12g37270
OsAffx.19998.2.S1_at--547--1671Chr12:22834404..22834428 (25 bp)
AGCCGCCTGGAATCATTGTCACTGA
LOC_Os12g37270
OsAffx.19998.2.S1_at--831--4151Chr12:22834325..22834349 (25 bp)
CGCCACCTAAGGATCTCAAGAGTCT
LOC_Os12g37270
OsAffx.19998.2.S1_at--312--3231Chr12:22834309..22834333 (25 bp)
CAAGAGTCTGAAGCTACACGGCAAT
LOC_Os12g37270
OsAffx.19998.2.S1_at--812--1571Chr12:22834298..22834322 (25 bp)
AGCTACACGGCAATCTGGTTGAGTT
LOC_Os12g37270
OsAffx.19998.2.S1_at--795--3051Chr12:22834222..22834246 (25 bp)
AATCGGGCTCAAGGATCATGATGCT
LOC_Os12g37270
OsAffx.19998.2.S1_at--156--7831Chr12:22834182..22834206 (25 bp)
GGTAAGCTACGAAACCTGTCCATCC
LOC_Os12g37270
OsAffx.19998.2.S1_at--1133--4611Chr12:22834046..22834070 (25 bp)
GCGTCAAGTTTCAACAAGGAGCATT
LOC_Os12g37270
OsAffx.19998.2.S1_at--444--8071Chr12:22834029..22834053 (25 bp)
GGAGCATTCCACGATCTTGAGCTAC
LOC_Os12g37270
OsAffx.19998.2.S1_at--751--4851Chr12:22834009..22834033 (25 bp)
GCTACTGGTGCTTTCTGGTTATATT
LOC_Os12g37270
Target Sequence 
CACCCACCTGCGCAAATTGGAAGTGACCGGTGTCAACAAGAAAAACAGCAAAAAGTTTTTATCTGCCCTTGCCGCTCTCA
GCCGCCTGGAATCATTGTCACTGATCTCAAAGGGGAAGCTAGGTCTCTGGGGCTGTCTGGATGCTGAAGAAAAGTTTTCG
CCACCTAAGGATCTCAAGAGTCTGAAGCTACACGGCAATCTGGTTGAGTTGCCAAAATGGATCGGGAAGCTCAACAATCT
CGTGAAGCTGAAGCTATCAGAAATCGGGCTCAAGGATCATGATGCTGCTATACAAGTCCTTGGTAAGCTACGAAACCTGT
CCATCCATTGCCTGCCGCGCAAGTCATTTCACTCGCTTGAGGGTGGAGAACTCAATTTCTCGGAGGGATCTTTCAAAAGC
CTGGTGGTTCTCAAGCTCCACTTCGGTGGGAGCAAATGCGTCAAGTTTCAACAAGGAGCATTCCACGATCTTGAGCTACT
GGTGCTTTCTGGTTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19998.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis