Browse Element(s) Details

Os.15171.1.S1_s_at

Description

gb:BM421235
DB_XREF= gi:18388037
DB_XREF=V003B03
CLONE=V003B03
TID=Os.15171.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.15171 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47454 (A.thaliana) T47454 lipoxygenase AtLOX2 - Arabidopsis thaliana
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os12g37260	11/11	Lipoxygenase 2.1, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os12g37220	NA	NA	12	+	22802394..22805725	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37230	NA	NA	12	+	22807324..22807785	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240	Os.41934.1.A1_x_at	2/11	12	+	22808803..22812500	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240	Os.14491.2.S1_x_at	1/11	12	+	22808803..22812500	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240	Os.47463.1.S1_x_at	1/11	12	+	22808803..22812500	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37250	Os.53949.1.S1_at	11/11	12	+	22815056..22817069	transposon protein, putative, Mariner sub-class, expressed
LOC_Os12g37260	Os.15171.1.S1_s_at	11/11	12	+	22821189..22826640	Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37260	Os.405.1.S1_a_at	11/11	12	+	22821189..22826640	Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37260	OsAffx.32067.1.S1_x_at	3/11	12	+	22821189..22826640	Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37270	OsAffx.19998.2.S1_at	11/11	12	+	22833919..22836477	Leucine Rich Repeat family protein
LOC_Os12g37280	OsAffx.19998.1.S1_at	11/11	12	+	22839331..22844099	Leucine Rich Repeat family protein, expressed
LOC_Os12g37290	OsAffx.7820.1.S1_at	11/11	12	+	22848639..22852781	resistance protein T10rga2-1A, putative

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006952	biological_process	defense response
GO:0009414	biological_process	response to water deprivation
GO:0009611	biological_process	response to wounding
GO:0009613	biological_process	response to pest, pathogen or parasite
GO:0009688	biological_process	abscisic acid biosynthesis
GO:0009695	biological_process	jasmonic acid biosynthesis
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0009753	biological_process	response to jasmonic acid stimulus
GO:0009816	biological_process	defense response to pathogenic bacteria, incompatible interaction
GO:0030397	biological_process	membrane disassembly
GO:0040007	biological_process	growth
GO:0009507	cellular_component	chloroplast
GO:0016165	molecular_function	lipoxygenase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.15171.1.S1_s_at--803--725	1	Chr12:22821703..22821727 (25 bp)	GTCCTGCCGGTGCTCAACCTGCTAT	LOC_Os12g37260
Os.15171.1.S1_s_at--544--917	1	Chr12:22821699..22821723 (25 bp)	TGCCGGTGCTCAACCTGCTATCGTC	LOC_Os12g37260
Os.15171.1.S1_s_at--363--397	1	Chr12:22821696..22821720 (25 bp)	CGGTGCTCAACCTGCTATCGTCACA	LOC_Os12g37260
Os.15171.1.S1_s_at--1038--731	1	Chr12:22821694..22821718 (25 bp)	GTGCTCAACCTGCTATCGTCACACT	LOC_Os12g37260
Os.15171.1.S1_s_at--812--1015	1	Chr12:22821681..22821705 (25 bp)	TATCGTCACACTCGCCCGGCGAGGA	LOC_Os12g37260
Os.15171.1.S1_s_at--480--399	1	Chr12:22821480..22821504 (25 bp)	CGTCCTACGGTGACCCTAAGGACAT	LOC_Os12g37260
Os.15171.1.S1_s_at--34--993	1	Chr12:22821475..22821499 (25 bp)	TACGGTGACCCTAAGGACATGACGT	LOC_Os12g37260
Os.15171.1.S1_s_at--977--735	1	Chr12:22821471..22821495 (25 bp)	GTGACCCTAAGGACATGACGTCCGT	LOC_Os12g37260
Os.15171.1.S1_s_at--840--581	1	Chr12:22821469..22821493 (25 bp)	GACCCTAAGGACATGACGTCCGTGA	LOC_Os12g37260
Os.15171.1.S1_s_at--726--291	1	Chr12:22821463..22821487 (25 bp)	AAGGACATGACGTCCGTGATGGAGA	LOC_Os12g37260
Os.15171.1.S1_s_at--82--215	1	Chr12:22821426..22821450 (25 bp)	ACAGCATCTCAATTTGAGTTGTGCC	LOC_Os12g37260

Target Sequence

GTCCTGCCGGTGCTCAACCTGCTATCGTCACACTCGCCCGGCGAGGAGTNNNNNNNNNCNCNNNCNGNNTCANGCGTGGA
TGGCGGACNANGGGAGNTCANGGNCGGCGTTCGGGANGGTTCANACGAGAGGATGATGANGCANTCNCNGAGATGATCGA
CTGNCCGGAACAAGGATCCGGAGNCGAAAGAACCGNCAGGGCCCCGGCGTGGTNCCGTACGTGCTGCTCAAGNCCGTCCT
ACGGTGACCCTAAGGACATGACGTCCGTGATGGAGATGGGCATCCCCNACAGCATCTCAATTTGAGTTGTGCC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis