Browse Element(s) Details


OsAffx.19998.1.S1_at

Description tigr:9640.m03616
TID=OsAffx.19998.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AB013448 Pib
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3728011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37250Os.53949.1.S1_at11/1112+22815056..22817069transposon protein, putative, Mariner sub-class, expressed
LOC_Os12g37260Os.15171.1.S1_s_at11/1112+22821189..22826640Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37260Os.405.1.S1_a_at11/1112+22821189..22826640Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37260OsAffx.32067.1.S1_x_at3/1112+22821189..22826640Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37270OsAffx.19998.2.S1_at11/1112+22833919..22836477Leucine Rich Repeat family protein
LOC_Os12g37280OsAffx.19998.1.S1_at11/1112+22839331..22844099Leucine Rich Repeat family protein, expressed
LOC_Os12g37290OsAffx.7820.1.S1_at11/1112+22848639..22852781resistance protein T10rga2-1A, putative
LOC_Os12g37300OsAffx.22848.3.S1_x_at3/1112+22858126..22864084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37310Os.43567.1.S1_x_at5/1112+22866225..22867206retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37310Os.29987.1.S1_at2/1112+22866225..22867206retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37310Os.38172.1.S1_x_at2/1112+22866225..22867206retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19998.1.S1_at--545--4692Chr12:22839900..22839924 (25 bp)
GCGGAATCATTGTCGCTGCTCTCGA
LOC_Os12g37280
OsAffx.19998.1.S1_at--330--4751Chr12:22839843..22839867 (25 bp)
GCTGATGAAGAGTTTTCACCACCTA
LOC_Os12g37280
OsAffx.19998.1.S1_at--179--6071Chr12:22839834..22839858 (25 bp)
GAGTTTTCACCACCTATGAATCTCA
LOC_Os12g37280
OsAffx.19998.1.S1_at--741--3371Chr12:22839827..22839851 (25 bp)
CACCACCTATGAATCTCAAGAGCCT
LOC_Os12g37280
OsAffx.19998.1.S1_at--963--7371Chr12:22839683..22839707 (25 bp)
GTGAGCTAAGAAACCTGACCATCCT
LOC_Os12g37280
OsAffx.19998.1.S1_at--189--5552Chr12:22839674..22839698 (25 bp)
GAAACCTGACCATCCTATGCCTGTC
LOC_Os12g37280
OsAffx.19998.1.S1_at--1017--2891Chr12:22839438..22839462 (25 bp)
AAGGAAGTCCGGCTCCATGGTGAAT
LOC_Os12g37280
OsAffx.19998.1.S1_at--983--8311Chr12:22839428..22839452 (25 bp)
GGCTCCATGGTGAATTTTATGCCAG
LOC_Os12g37280
OsAffx.19998.1.S1_at--820--1411Chr12:22839405..22839429 (25 bp)
AGAAACGAGCAATCCGCACCAAGAT
LOC_Os12g37280
OsAffx.19998.1.S1_at--434--5692Chr12:22839372..22839396 (25 bp)
GACTTGCTGGCACAGCTTTCTGAGA
LOC_Os12g37280
OsAffx.19998.1.S1_at--780--3911Chr12:22839366..22839390 (25 bp)
CTGGCACAGCTTTCTGAGAATCCAA
LOC_Os12g37280
Target Sequence 
GCGGAATCATTGTCGCTGCTCTCGAAGGGGGAGCCAGGTCTCTGGGGTTGTCTTGATGCTGATGAAGAGTTTTCACCACC
TATGAATCTCAAGAGCCTGAAGCTGCAAGGCAACCTGGTTGAGTTGCCAAAATGGATCAGGCAGCTCAACAATCTCGTGA
AGCTGAAGCTATCAGAAACAATGCTAAAGGATCATAATGCTACTATACAAGTCCTTGGTGAGCTAAGAAACCTGACCATC
CTATGCCTGTCGCGCGAGCCGTTTCACTCGCTTGAGGGTGGCGAACTCAATTTCTCGGAGGGATCTTTCATAAGCCTGGT
GGTTCTCGAGCTCCACTTCGGTGGGAGCAAATGTGTCAAGTTTGAACAAGGAGCGTTCCTCAATCTTGAGCTACTGCTGC
TTTCAGTTTACTATGAAGAAGTTGAAACTAAGTTCTCTGGGCTAGAATTTCTCCCAGGAATCAAGGAAGTCCGGCTCCAT
GGTGAATTTTATGCCAGAAACGAGCAATCCGCACCAAGATTGAAAGAGGACTTGCTGGCACAGCTTTCTGAGAATCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis