Browse Element(s) Details

Os.29987.1.S1_at

Description

gb:AY341857.1
DB_XREF= gi:33519201
TID=Os.29987.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29987 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) WRKY17 mRNA, complete cds.
PROD=WRKY17
FL= gb:AY341857.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os05g50610	11/11	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g60524	6/11	transposon protein, putative, unclassified
LOC_Os01g06780	5/11	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09930	5/11	transposon protein, putative, unclassified
LOC_Os07g03440	4/11	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g03570	4/11	transposon protein, putative, unclassified
LOC_Os07g03550	4/11	transposon protein, putative, unclassified
LOC_Os07g03350	4/11	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g02490	3/11	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37310	2/11	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g59280	2/11	transposon protein, putative, unclassified
LOC_Os04g46690	1/11	hAT family dimerisation domain containing protein
LOC_Os03g15310	1/11	transposon protein, putative, unclassified

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os05g50550	Os.18305.1.S2_at	11/11	5	+	28901377..28904741	Polyprenyl synthetase family protein, expressed
LOC_Os05g50550	Os.18305.1.S1_at	11/11	5	+	28901377..28904741	Polyprenyl synthetase family protein, expressed
LOC_Os05g50560	Os.52787.1.S1_at	7/11	5	+	28906389..28912094	mitogen-activated protein kinase, putative, expressed
LOC_Os05g50570	Os.53101.1.S1_at	10/11	5	+	28912701..28914261	Serine carboxypeptidase family protein, expressed
LOC_Os05g50580	Os.56284.1.S1_at	11/11	5	+	28916940..28918772	Serine carboxypeptidase family protein, expressed
LOC_Os05g50590	OsAffx.15183.1.S1_at	10/11	5	+	28918822..28919562	hypothetical protein
LOC_Os05g50600	Os.27648.1.S1_at	11/11	5	+	28920855..28922556	Serine carboxypeptidase family protein, expressed
LOC_Os05g50600	Os.45963.1.S1_x_at	1/11	5	+	28920855..28922556	Serine carboxypeptidase family protein, expressed
LOC_Os05g50610	Os.29987.2.S1_at	11/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610	Os.29987.1.S1_at	11/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610	Os.43567.1.S1_x_at	5/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610	Os.53217.1.S1_x_at	4/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610	Os.38172.1.S1_x_at	2/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50624	Os.51355.1.S1_at	11/11	5	+	28938490..28940826	hAT family dimerisation domain containing protein, expressed
LOC_Os05g50624	Os.7726.1.S1_at	9/11	5	+	28938490..28940826	hAT family dimerisation domain containing protein, expressed
LOC_Os05g50640	Os.54158.1.S1_at	11/11	5	+	28945595..28949500	hAT family dimerisation domain containing protein, expressed
LOC_Os05g50650	Os.36306.2.S1_x_at	2/11	5	+	28950692..28952249	retrotransposon protein, putative, Ty3-gypsy subclass, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0003677	molecular_function	DNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.29987.1.S1_at--60--343	2	Chr05:28926538..28926737 (25 bp)	CAGACCAACAACAGGAATCGGTTCT	LOC_Os05g50610
Os.29987.1.S1_at--661--585	2	Chr05:28926536..28926735 (25 bp)	GACCAACAACAGGAATCGGTTCTTA	LOC_Os05g50610
Os.29987.1.S1_at--995--325	2	Chr05:28926533..28926732 (25 bp)	CAACAACAGGAATCGGTTCTTAAGT	LOC_Os05g50610
Os.29987.1.S1_at--451--327	2	Chr05:28926530..28926550 (21 bp)	CAACAGGAATCGGTTCTTAAGTGCG	LOC_Os05g50610
Os.29987.1.S1_at--1004--249	2	Chr05:28926529..28926550 (22 bp)	AACAGGAATCGGTTCTTAAGTGCGA	LOC_Os05g50610
Os.29987.1.S1_at--706--549	67	Chr12:23736459..23736824 (25 bp)	GAAAACCGTACACCCGGCTCAAGAT	NONE
Os.29987.1.S1_at--562--1061	46	Chr10:22672921..22672945 (25 bp)	TTCGGGCTCCGGAACTACACGCGAA	NONE
Os.29987.1.S1_at--1083--941	47	Chr10:22672922..22672946 (25 bp)	TCGGGCTCCGGAACTACACGCGAAA	NONE
Os.29987.1.S1_at--1049--757	46	Chr09:19061089..19061113 (25 bp)	GGGCTCCGGAACTACACGCGAAACG	NONE
Os.29987.1.S1_at--932--451	45	Chr09:19061091..19061115 (25 bp)	GCTCCGGAACTACACGCGAAACGGG	NONE
Os.29987.1.S1_at--615--547	298	Chr12:3891685..3891708 (24 bp)	GAACTACACGCGAAACGGGACAACT	NONE

Target Sequence

CAGACCAACAACAGGAATCGGTTCTTAAGTGCGAGAGCGGGAAAACCGTACACCCGGCTCAAGATGTTCAAAGGTGGCTT
GCCTTGCTCGAGATCTGGAGCTTGATCCTCGAAATCCTCGCACTGCGGGTCTTCGGGCTCCGGAACTACACGCGAAACGG
GACAACT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis