Browse Element(s) Details


Os.52787.1.S1_at

Description gb:AK069254.1
DB_XREF= gi:32979278
TID=Os.52787.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014J06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014J06, full insert sequence.
FL= gb:AK069254.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g505607/11mitogen-activated protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50510Os.50276.1.S1_at11/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510Os.18001.3.S1_at3/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510Os.18001.3.S1_x_at1/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510OsAffx.17241.1.S1_at1/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50520NANA5+28888150..28892854retrotransposon protein, putative, unclassified
LOC_Os05g50530OsAffx.19258.2.S1_x_at10/115+28893468..28896400hypothetical protein
LOC_Os05g50530OsAffx.24518.2.S1_x_at2/115+28893468..28896400hypothetical protein
LOC_Os05g50530Os.57200.1.S1_x_at1/115+28893468..28896400hypothetical protein
LOC_Os05g50540Os.28943.1.S1_x_at4/115+28896949..28898187retrotransposon protein, putative, unclassified
LOC_Os05g50550Os.18305.1.S2_at11/115+28901377..28904741Polyprenyl synthetase family protein, expressed
LOC_Os05g50550Os.18305.1.S1_at11/115+28901377..28904741Polyprenyl synthetase family protein, expressed
LOC_Os05g50560Os.52787.1.S1_at7/115+28906389..28912094mitogen-activated protein kinase, putative, expressed
LOC_Os05g50570Os.53101.1.S1_at10/115+28912701..28914261Serine carboxypeptidase family protein, expressed
LOC_Os05g50580Os.56284.1.S1_at11/115+28916940..28918772Serine carboxypeptidase family protein, expressed
LOC_Os05g50590OsAffx.15183.1.S1_at10/115+28918822..28919562hypothetical protein
LOC_Os05g50600Os.27648.1.S1_at11/115+28920855..28922556Serine carboxypeptidase family protein, expressed
LOC_Os05g50600Os.45963.1.S1_x_at1/115+28920855..28922556Serine carboxypeptidase family protein, expressed
LOC_Os05g50610Os.29987.2.S1_at11/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.29987.1.S1_at11/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.43567.1.S1_x_at5/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.53217.1.S1_x_at4/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.38172.1.S1_x_at2/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0004707molecular_functionMAP kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52787.1.S1_at--602--1391Chr05:28911856..28911880 (25 bp)
AGACGCAGGCCTATGCTTATCCGAA
LOC_Os05g50560
Os.52787.1.S1_at--1025--691Chr05:28911912..28911936 (25 bp)
ATGAGAGGATCCACGTTCCATCATT
LOC_Os05g50560
Os.52787.1.S1_at--158--4031Chr05:28911925..28911949 (25 bp)
CGTTCCATCATTCAGCAGGATCAAA
LOC_Os05g50560
Os.52787.1.S1_at--394--5731Chr05:28911980..28912004 (25 bp)
GACTGACATATACACAAGATCTCTT
LOC_Os05g50560
Os.52787.1.S1_at--728--10491Chr05:28912003..28912027 (25 bp)
TTAACGGTATTGTTGCTGCCGCGAC
LOC_Os05g50560
Os.52787.1.S1_at--574--2051Chr05:28912026..28912050 (25 bp)
ACTTCGGCAGGCGTTGGTACTAACA
LOC_Os05g50560
Os.52787.1.S1_at--328--5551Chr05:28912051..28912075 (25 bp)
GAAAGGTTGGTGCTGTACCCATCAG
LOC_Os05g50560
Os.52787.1.S1_at--1051--191Chr05:28912132..28912156 (25 bp)
ATTTCGTTGCTGGATTGGCTCCTAA
NONE
Os.52787.1.S1_at--826--6551Chr05:28912235..28912259 (25 bp)
GATTCAGTTTGACCTCTTCCACTTG
NONE
Os.52787.1.S1_at--570--6831Chr05:28912262..28912286 (25 bp)
GTTTCACCTGATCAGCTAGGTACAA
NONE
Os.52787.1.S1_at--1050--2251Chr05:28912360..28912383 (24 bp)
AAATACTACATCACACAGGTCAGCT
NONE
Target Sequence 
AGACGCAGGCCTATGCTTATCCGAACAGCAAAGTCACGGCTGATGTTGCTCTGGACATGAGAGGATCCACGTTCCATCAT
TCAGCAGGATCAAAGAACGGCTCGTTAGATAGAATGGTAACACAGACTGACATATACACAAGATCTCTTAACGGTATTGT
TGCTGCCGCGACTTCGGCAGGCGTTGGTACTAACAGAAAGGTTGGTGCTGTACCCATCAGCACCTCAAGGATGTATTAGT
AGTGGCNAACAGCCTAAATTGATTGGCATATATTGGATTTCGTTGCTGGATTGGCTCCTAATTATTTANCAGCCACCAGT
AATAAACGGAGAAGTTTGCCTGGAAGATGGTCAGATGGATGAGGACGACTATTAGAGGTGATTCAGTTTGACCTCTTCCA
CTTGNTGTTTCACCTGATCAGCTAGGTACAANTTGTCTTTCNTCTCTGTGCACCAGACAAACAACAGAGATGTACCCNAG
CGACATACTCTTTCTTGCTAAANTACNAAATACTACATCACACAGGTCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis