Browse Element(s) Details


Os.57200.1.S1_x_at

Description gb:AK111130.1
DB_XREF= gi:32996339
TID=Os.57200.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-C11, full insert sequence.
FL= gb:AK111130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g098306/11expressed protein
LOC_Os05g505301/11hypothetical protein
LOC_Os11g396601/11hAT family dimerisation domain containing protein
LOC_Os08g232001/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09790Os.46306.1.S1_x_at2/1111+5224122..5230334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09800OsAffx.30908.1.S1_at10/1111+5237021..5238904hypothetical protein
LOC_Os11g09800OsAffx.30908.1.S1_x_at10/1111+5237021..5238904hypothetical protein
LOC_Os11g09810OsAffx.18769.1.S1_at10/1111+5240516..5246459hypothetical protein
LOC_Os11g09810Os.29072.1.S1_at1/1111+5240516..5246459hypothetical protein
LOC_Os11g09810OsAffx.4696.1.S1_at1/1111+5240516..5246459hypothetical protein
LOC_Os11g09820OsAffx.30909.1.S1_at11/1111+5247441..5250444expressed protein
LOC_Os11g09820Os.16598.1.S1_at11/1111+5247441..5250444expressed protein
LOC_Os11g09830Os.53312.1.S1_at11/1111+5253571..5254967expressed protein
LOC_Os11g09830Os.57200.1.S1_x_at6/1111+5253571..5254967expressed protein
LOC_Os11g09840OsAffx.7053.1.S1_at11/1111+5257617..5258948expressed protein
LOC_Os11g09850Os.53740.1.S1_s_at11/1111+5272112..5275433expressed protein
LOC_Os11g09850Os.27601.1.A1_at10/1111+5272112..5275433expressed protein
LOC_Os11g09850Os.53740.1.S1_at8/1111+5272112..5275433expressed protein
LOC_Os11g09860OsAffx.30910.2.S1_at11/1111+5275960..5276400hypothetical protein
LOC_Os11g09860OsAffx.30910.1.S1_x_at1/1111+5275960..5276400hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57200.1.S1_x_at--56--5791Chr11:5261046..5261070 (25 bp)
GACGAACAACTAGTGGCAGTGGACC
NONE
Os.57200.1.S1_x_at--388--5011Chr11:5261031..5261055 (25 bp)
GCAGTGGACCAACAATGGCTGGCAA
NONE
Os.57200.1.S1_x_at--1005--851Chr11:5261017..5261041 (25 bp)
ATGGCTGGCAACATCTTAGAATGCT
NONE
Os.57200.1.S1_x_at--872--3551Chr11:5261006..5261030 (25 bp)
CATCTTAGAATGCTGTTCGTGTGAT
NONE
Os.57200.1.S1_x_at--293--3994Chr11:23121830..23121854 (25 bp)
CGTGTGATTCCACCCAATGATGATG
LOC_Os11g39660
Os.57200.1.S1_x_at--813--2351Chr11:5254029..5254053 (25 bp)
AAAGCTGTTGTGTAGCTCCTCAGGG
LOC_Os11g09830
Os.57200.1.S1_x_at--1156--131Chr11:5254003..5254027 (25 bp)
ATTAGATGGCCGTCCAAGTTGGTAC
LOC_Os11g09830
Os.57200.1.S1_x_at--742--8591Chr11:5253984..5254008 (25 bp)
TGGTACAATACACTGCTCTGTCTTG
LOC_Os11g09830
Os.57200.1.S1_x_at--721--211Chr11:5253954..5253978 (25 bp)
ATTTGATCGAACACGTCCTGGGCAT
LOC_Os11g09830
Os.57200.1.S1_x_at--760--10091Chr11:5253845..5253869 (25 bp)
TAGGAGCTTTTGTATCATTCTGGGA
LOC_Os11g09830
Os.57200.1.S1_x_at--317--3171Chr11:5253743..5253767 (25 bp)
AATTGTAATTTGACTCGGCTCTGTA
LOC_Os11g09830
Target Sequence 
GACGAACAACTAGTGGCAGTGGACCAACAATGGCTGGCAACATCTTAGAATGCTGTTCGTGTGATTCCACCCAATGATGA
TGAAAAGAAGCCCCCGTGGAGGGGATTGAGGAGATTGAGAAGATACGCAAAACGAGGGAGTGAGGGTTCTCTTTGTGGGG
TCGTCTCTGTGATGGCATGGGTGTTGGGGTGGGGTTTTGTCCACAGGGGTTTATGGTGCATGAAAGCTGTTGTGTAGCTC
CTCAGGGCATTAGATGGCCGTCCAAGTTGGTACAATACACTGCTCTGTCTTGCAGGCATTTGATCGAACACGTCCTGGGC
ATGCAGCTGAGCTGAGGGAGGCAAAACAGACTTTAGGCTGAAACGAGAGAGGGAGTGGGCTGGCAGTAAAAGGGAGTCCA
CTGTAATAGGAGCTTTTGTATCATTCTGGGATTTGTAGTTTAGGAAATTGAAAGGGGATTTGGATGGGGAAAACAACATG
TGCATTTGGACTTATGATTCGACAGTGTAATTGTAATTTGACTCGGCTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57200.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis