Browse Element(s) Details


OsAffx.30909.1.S1_at

Description tigr:9639.m00927
TID=OsAffx.30909.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0982011/11expressed protein
LOC_Os11g163301/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09790Os.46306.1.S1_x_at2/1111+5224122..5230334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09800OsAffx.30908.1.S1_at10/1111+5237021..5238904hypothetical protein
LOC_Os11g09800OsAffx.30908.1.S1_x_at10/1111+5237021..5238904hypothetical protein
LOC_Os11g09810OsAffx.18769.1.S1_at10/1111+5240516..5246459hypothetical protein
LOC_Os11g09810Os.29072.1.S1_at1/1111+5240516..5246459hypothetical protein
LOC_Os11g09810OsAffx.4696.1.S1_at1/1111+5240516..5246459hypothetical protein
LOC_Os11g09820OsAffx.30909.1.S1_at11/1111+5247441..5250444expressed protein
LOC_Os11g09820Os.16598.1.S1_at11/1111+5247441..5250444expressed protein
LOC_Os11g09830Os.53312.1.S1_at11/1111+5253571..5254967expressed protein
LOC_Os11g09830Os.57200.1.S1_x_at6/1111+5253571..5254967expressed protein
LOC_Os11g09840OsAffx.7053.1.S1_at11/1111+5257617..5258948expressed protein
LOC_Os11g09850Os.53740.1.S1_s_at11/1111+5272112..5275433expressed protein
LOC_Os11g09850Os.27601.1.A1_at10/1111+5272112..5275433expressed protein
LOC_Os11g09850Os.53740.1.S1_at8/1111+5272112..5275433expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30909.1.S1_at--1023--1691Chr11:5248550..5248574 (25 bp)
ACCAGCAGAAGTTTGTTCGCAGCAA
LOC_Os11g09820
OsAffx.30909.1.S1_at--1120--5371Chr11:5248521..5248545 (25 bp)
GAAGAATTGCTAGTCGCATACTCGG
LOC_Os11g09820
OsAffx.30909.1.S1_at--1127--3151Chr11:5248517..5248541 (25 bp)
AATTGCTAGTCGCATACTCGGGACA
LOC_Os11g09820
OsAffx.30909.1.S1_at--767--4851Chr11:5248513..5248537 (25 bp)
GCTAGTCGCATACTCGGGACAACAT
LOC_Os11g09820
OsAffx.30909.1.S1_at--498--4951Chr11:5248506..5248530 (25 bp)
GCATACTCGGGACAACATCCTTGGG
LOC_Os11g09820
OsAffx.30909.1.S1_at--906--5111Chr11:5248014..5248167 (25 bp)
GCACATGTTTTGGTCGTTGCACCTT
LOC_Os11g09820
OsAffx.30909.1.S1_at--1000--10851Chr11:5248005..5248027 (23 bp)
TTGGTCGTTGCACCTTTTGTGATGA
LOC_Os11g09820
OsAffx.30909.1.S1_at--1008--5152Chr11:5247979..5248003 (25 bp)
GCAAGCAAAATTTTACATCCACCAT
LOC_Os11g09820
OsAffx.30909.1.S1_at--387--9831Chr11:5247490..5247514 (25 bp)
TAAAGGCTTTGTTCGGCTACTATGG
LOC_Os11g09820
OsAffx.30909.1.S1_at--24--4891Chr11:5247485..5247509 (25 bp)
GCTTTGTTCGGCTACTATGGATGGA
LOC_Os11g09820
OsAffx.30909.1.S1_at--606--6711Chr11:5247480..5247504 (25 bp)
GTTCGGCTACTATGGATGGATTCAC
LOC_Os11g09820
Target Sequence 
ACCAGCAGAAGTTTGTTCGCAGCAAGCTGGAAGAATTGCTAGTCGCATACTCGGGACAACATCCTTGGGAACCAAGATAT
AAGCTTGACCTCATCTGTGGAGTGGAGGAACCTCAATCCTACCACTGGAGATGCTACCATGCTAACTTCTTGGCAAGCAC
CCATGGCACTGTGCTCAAACTAGATGGTGAGGCAACCACAACACCAAACCCTGTGCGCACACTCTTCTTCGCTCAATTCT
GGGACTCGCAACCTGGTCGATTCAATGAATCAAACTCAAAGACCATCTGCTGCCCTGTTCAAGTTAGCACATGTTTTGGT
CGTTGCACCTTTTGTGATGAAGCAAGCAAAATTTTACATCCACCATGTCTATCTGGAAGTTATCCTGATGATGGTGATGA
TGCCGTCATTCATGACTACGATGTTACTGATGCCATTCTTATGTATGATTACTTTTGGTTTATGCTGGATGTGACTAGAT
TACTCGTGGTGTTGGTAGCTGGAAGTGAAAGGGATCGTATTTCACTAAAGGCTTTGTTCGGCTACTATGGATGGATTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis