Browse Element(s) Details


Os.53312.1.S1_at

Description gb:AK071941.1
DB_XREF= gi:32981964
TID=Os.53312.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013085D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013085D16, full insert sequence.
FL= gb:AK071941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0983011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09790Os.46306.1.S1_x_at2/1111+5224122..5230334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09800OsAffx.30908.1.S1_at10/1111+5237021..5238904hypothetical protein
LOC_Os11g09800OsAffx.30908.1.S1_x_at10/1111+5237021..5238904hypothetical protein
LOC_Os11g09810OsAffx.18769.1.S1_at10/1111+5240516..5246459hypothetical protein
LOC_Os11g09810Os.29072.1.S1_at1/1111+5240516..5246459hypothetical protein
LOC_Os11g09810OsAffx.4696.1.S1_at1/1111+5240516..5246459hypothetical protein
LOC_Os11g09820OsAffx.30909.1.S1_at11/1111+5247441..5250444expressed protein
LOC_Os11g09820Os.16598.1.S1_at11/1111+5247441..5250444expressed protein
LOC_Os11g09830Os.53312.1.S1_at11/1111+5253571..5254967expressed protein
LOC_Os11g09830Os.57200.1.S1_x_at6/1111+5253571..5254967expressed protein
LOC_Os11g09840OsAffx.7053.1.S1_at11/1111+5257617..5258948expressed protein
LOC_Os11g09850Os.53740.1.S1_s_at11/1111+5272112..5275433expressed protein
LOC_Os11g09850Os.27601.1.A1_at10/1111+5272112..5275433expressed protein
LOC_Os11g09850Os.53740.1.S1_at8/1111+5272112..5275433expressed protein
LOC_Os11g09860OsAffx.30910.2.S1_at11/1111+5275960..5276400hypothetical protein
LOC_Os11g09860OsAffx.30910.1.S1_x_at1/1111+5275960..5276400hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53312.1.S1_at--431--2415Chr04:21895710..21895817 (25 bp)
AAACACTGCTTCGTTTTGCGTGCTA
NONE
Os.53312.1.S1_at--889--3631Chr11:5254133..5254157 (25 bp)
CTTCGTTTTGCGTGCTAGGGAGTGA
LOC_Os11g09830
Os.53312.1.S1_at--880--3111Chr11:5253704..5253728 (25 bp)
AATATTTATTCTGGCCCTGTGTCTG
LOC_Os11g09830
Os.53312.1.S1_at--289--8471Chr11:5253693..5253717 (25 bp)
TGGCCCTGTGTCTGGACTAGATATG
LOC_Os11g09830
Os.53312.1.S1_at--81--6511Chr11:5253674..5253698 (25 bp)
GATATGGCTTGTATGGTTGTGGCTT
LOC_Os11g09830
Os.53312.1.S1_at--934--7531Chr11:5253656..5253680 (25 bp)
GTGGCTTGGACAACATTCTGTAATT
LOC_Os11g09830
Os.53312.1.S1_at--336--7931Chr11:5253630..5253654 (25 bp)
GGATTGTATAGATCGGACTTGTGAT
LOC_Os11g09830
Os.53312.1.S1_at--497--2071Chr11:5253614..5253638 (25 bp)
ACTTGTGATGTGGTTCTGTATATTC
LOC_Os11g09830
Os.53312.1.S1_at--167--6891Chr11:5253597..5253621 (25 bp)
GTATATTCATAATTTGGACTCTGCA
LOC_Os11g09830
Os.53312.1.S1_at--759--3111Chr11:5253587..5253611 (25 bp)
AATTTGGACTCTGCAGGGTACTGTA
LOC_Os11g09830
Os.53312.1.S1_at--210--3471Chr11:5253574..5253598 (25 bp)
CAGGGTACTGTATGTTTGGCATGGA
LOC_Os11g09830
Target Sequence 
AAACACTGCTTCGTTTTGCGTGCTAGGGAGTGAGGGTTCTCTTTGTGGGGTCGTCTCTGTGATGGCATGGGTGTTGGGGT
GGGGTTTTGTCCACAGGGGTTTATGGTGCATGAAAGCTGTTGTGTAGCTCCTCAGGGCATTAGATGGCCGTCCAAGTTGG
TACAATACACTGCTCTGTCTTGCAGGCATTTGATCGAACACGTCCTGGGCATGCAGCTGAGCTGAGGGAGGCAAAACAGA
CTTTAGGCTGAAACGAGAGAGGGAGTGGGCTGGCAGTAAAAGGGAGTCCACTGTAATAGGAGCTTTTGTATCATTCTGGG
ATTTGTAGTTTAGGAAATTGAAAGGGGATTTGGATGGGGAAAACAACATGTGCATTTGGACTTATGATTCGACAGTGTAA
TTGTAATTTGACTCGGCTCTGTATAAATGGACTGCATAATATTTATTCTGGCCCTGTGTCTGGACTAGATATGGCTTGTA
TGGTTGTGGCTTGGACAACATTCTGTAATTGGGATTGTATAGATCGGACTTGTGATGTGGTTCTGTATATTCATAATTTG
GACTCTGCAGGGTACTGTATGTTTGGCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis