Browse Element(s) Details


OsAffx.17241.1.S1_at

Description tigr:9636.m03040
TID=OsAffx.17241.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=clathrin assembly protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3048011/11Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os05g505101/11O-acetyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30440Os.46334.1.S1_x_at4/118+18602696..18605776hypothetical protein
LOC_Os08g30440Os.27435.1.S1_x_at2/118+18602696..18605776hypothetical protein
LOC_Os08g30440Os.46334.1.S1_at1/118+18602696..18605776hypothetical protein
LOC_Os08g30450OsAffx.22421.2.S1_at5/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.1.S1_at3/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.4.S1_x_at2/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.3.S1_at1/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30460OsAffx.7866.1.S1_x_at1/118+18616890..18617456hypothetical protein
LOC_Os08g30470OsAffx.29436.1.S1_at11/118+18619456..18620884hypothetical protein
LOC_Os08g30480OsAffx.17241.1.S1_at11/118+18625646..18627550Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os08g30480Os.12924.1.S1_s_at10/118+18625646..18627550Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os08g30490Os.54892.1.S1_at11/118+18632454..18635218expressed protein
LOC_Os08g30500NANA8+18635935..18636243hypothetical protein
LOC_Os08g30510Os.11326.1.S1_at5/118+18637479..18638591expressed protein
LOC_Os08g30520Os.7577.1.S1_at11/118+18643961..18645898expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
GO:0016413molecular_functionO-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17241.1.S1_at--483--5071Chr08:18625909..18625933 (25 bp)
GCACCGACCAGCAGGTTTTGGTTAA
LOC_Os08g30480
OsAffx.17241.1.S1_at--256--4151Chr08:18625963..18625987 (25 bp)
CCTCCTCGTTTTCTTGGATCCAATA
LOC_Os08g30480
OsAffx.17241.1.S1_at--1084--7951Chr08:18625978..18626002 (25 bp)
GGATCCAATATTGCCCAGCGCGGAA
LOC_Os08g30480
OsAffx.17241.1.S1_at--7--1651Chr08:18625994..18626018 (25 bp)
AGCGCGGAAACTTGGGCTCCGGATT
LOC_Os08g30480
OsAffx.17241.1.S1_at--594--1671Chr08:18626044..18626068 (25 bp)
AGCCTCCTGTTCTTGGATCTGGATC
LOC_Os08g30480
OsAffx.17241.1.S1_at--383--492Chr08:18626060..18626146 (25 bp)
ATCTGGATCTGTGCAGTGTTCGTTC
LOC_Os08g30480
OsAffx.17241.1.S1_at--277--7871Chr08:18627060..18627084 (25 bp)
GGTATTTTTCAGTAATCCCAACAAT
LOC_Os08g30480
OsAffx.17241.1.S1_at--328--10371Chr08:18627088..18627112 (25 bp)
TTTTCTTGTGACTGTAAATACGCTC
LOC_Os08g30480
OsAffx.17241.1.S1_at--982--3091Chr08:18627104..18627128 (25 bp)
AATACGCTCACATATATCACATGGG
LOC_Os08g30480
OsAffx.17241.1.S1_at--940--8131Chr08:18627127..18627151 (25 bp)
GGACAAGCTGATGGTAATTATCCTT
LOC_Os08g30480
OsAffx.17241.1.S1_at--380--10151Chr08:18627145..18627169 (25 bp)
TATCCTTTTGGCCAGTGTGAACTCG
LOC_Os08g30480
Target Sequence 
GCACCGACCAGCAGGTTTTGGTTAACCCCCCAATTCCCGATCCCCCCTCCGATTCCTCCTCGTTTTCTTGGATCCAATAT
TGCCCAGCGCGGAAACTTGGGCTCCGGATTGGTGGGTGGGGGAGCGGGGAAAGGAAGCCTCCTGTTCTTGGATCTGGATC
TGTGCAGTGTTCGTTCGTGGAGCACCGGAACTACAAGGTGGTGTACCGGCGGTACGCTTCCCTCTTCTTCCTCGTCGGCG
TCGACAACGACGAGAATGAGCTAGCTATTCTCGAATTCATTCATCTTTTTGTGGAAACTATGGACCGCCACTTCGGAAAT
GTGGTATTTTTCAGTAATCCCAACAATTATTTTTCTTGTGACTGTAAATACGCTCACATATATCACATGGGACAAGCTGA
TGGTAATTATCCTTTTGGCCAGTGTGAACTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis