Browse Element(s) Details


Os.11326.1.S1_at

Description gb:AK069626.1
DB_XREF= gi:32979650
TID=Os.11326.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024F13, full insert sequence.
FL= gb:AK069626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g305105/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30450OsAffx.22421.2.S1_at5/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.1.S1_at3/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.4.S1_x_at2/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.3.S1_at1/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30460OsAffx.7866.1.S1_x_at1/118+18616890..18617456hypothetical protein
LOC_Os08g30470OsAffx.29436.1.S1_at11/118+18619456..18620884hypothetical protein
LOC_Os08g30480OsAffx.17241.1.S1_at11/118+18625646..18627550Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os08g30480Os.12924.1.S1_s_at10/118+18625646..18627550Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os08g30490Os.54892.1.S1_at11/118+18632454..18635218expressed protein
LOC_Os08g30500NANA8+18635935..18636243hypothetical protein
LOC_Os08g30510Os.11326.1.S1_at5/118+18637479..18638591expressed protein
LOC_Os08g30520Os.7577.1.S1_at11/118+18643961..18645898expressed protein
LOC_Os08g30529NANA8+18653734..18654343NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11326.1.S1_at--744--8011Chr08:18637752..18637776 (25 bp)
GGAGGAAAAGCCTAGCGTCCCGCCG
LOC_Os08g30510
Os.11326.1.S1_at--568--6411Chr08:18637713..18637737 (25 bp)
GATCTGCCGAGTTTTACGTATCTGC
LOC_Os08g30510
Os.11326.1.S1_at--290--2511Chr08:18637668..18637692 (25 bp)
AACATCGGCCAAGCCGTGATGTGTC
LOC_Os08g30510
Os.11326.1.S1_at--289--5751Chr08:18637640..18637664 (25 bp)
GACGGCAAATGCATGCACGCGGGAA
LOC_Os08g30510
Os.11326.1.S1_at--535--8011Chr08:18637607..18637631 (25 bp)
GGAGGCACCGATTAGGATCAACAAT
LOC_Os08g30510
Os.11326.1.S1_at--760--7391Chr08:18637454..18637478 (25 bp)
GTGTAATTTTGAACTAACCGGCATC
NONE
Os.11326.1.S1_at--908--9551Chr08:18637391..18637415 (25 bp)
TCTTTTGTATACGTATCCAGCCGCG
NONE
Os.11326.1.S1_at--844--10131Chr08:18637378..18637402 (25 bp)
TATCCAGCCGCGATGTTCGGAAACT
NONE
Os.11326.1.S1_at--98--2231Chr08:18637314..18637338 (25 bp)
ACAATGTTACTTTTTAGCTGCCGGT
NONE
Os.11326.1.S1_at--663--4931Chr08:18637284..18637308 (25 bp)
GCATTAAATGCTCTTTTCCTATCCG
NONE
Os.11326.1.S1_at--324--9251Chr08:18637268..18637292 (25 bp)
TCCTATCCGGTAGCAAGCTCTGTGA
NONE
Target Sequence 
GGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGG
CCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAG
GATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAG
AAACAAATATTCACCATGTTTATTACTACCTCTGTTTTCAAATAAATAGTATTGATTAGTGTAATTTTGAACTAACCGGC
ATCAAACAAAAAGAAACAGAGAGATACTTGTTTACGTTACTTCTTTTGTATACGTATCCAGCCGCGATGTTCGGAAACTG
TGTAGGATCGAGATTGGCATCGATCAGTAAGGGCATCAACAATGTTACTTTTTAGCTGCCGGTAAGAAGCATTAAATGCT
CTTTTCCTATCCGGTAGCAAGCTCTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis