Browse Element(s) Details


Os.7577.1.S1_at

Description gb:AK069665.1
DB_XREF= gi:32979689
TID=Os.7577.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027H24, full insert sequence.
FL= gb:AK069665.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3052011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30470OsAffx.29436.1.S1_at11/118+18619456..18620884hypothetical protein
LOC_Os08g30480OsAffx.17241.1.S1_at11/118+18625646..18627550Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os08g30480Os.12924.1.S1_s_at10/118+18625646..18627550Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os08g30490Os.54892.1.S1_at11/118+18632454..18635218expressed protein
LOC_Os08g30500NANA8+18635935..18636243hypothetical protein
LOC_Os08g30510Os.11326.1.S1_at5/118+18637479..18638591expressed protein
LOC_Os08g30520Os.7577.1.S1_at11/118+18643961..18645898expressed protein
LOC_Os08g30529NANA8+18653734..18654343NA
LOC_Os08g30540OsAffx.17243.1.S1_at11/118+18665083..18666038expressed protein
LOC_Os08g30550Os.54691.1.S1_x_at4/118+18668980..18681773hypothetical protein
LOC_Os08g30550Os.45902.1.A1_x_at2/118+18668980..18681773hypothetical protein
LOC_Os08g30550OsAffx.22442.1.S1_x_at1/118+18668980..18681773hypothetical protein
LOC_Os08g30550OsAffx.10222.1.S1_x_at1/118+18668980..18681773hypothetical protein
LOC_Os08g30550Os.51841.1.S1_x_at1/118+18668980..18681773hypothetical protein
LOC_Os08g30550Os.10263.1.S1_at1/118+18668980..18681773hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7577.1.S1_at--338--5971Chr08:18645301..18645325 (25 bp)
GAGAAGATGAGCTGCGTGTTCCGCA
LOC_Os08g30520
Os.7577.1.S1_at--823--8791Chr08:18645317..18645341 (25 bp)
TGTTCCGCAACGTGCTGGCGTTCGA
LOC_Os08g30520
Os.7577.1.S1_at--265--9631Chr08:18645455..18645479 (25 bp)
TCATGGAGCACTCGCTCGGGAACGA
LOC_Os08g30520
Os.7577.1.S1_at--245--10631Chr08:18645631..18645655 (25 bp)
TTCGACAACCCGTGGCTCATATTGG
LOC_Os08g30520
Os.7577.1.S1_at--353--5091Chr08:18645686..18645710 (25 bp)
GCACGCTCGTGCAGACGGTGTTCGC
LOC_Os08g30520
Os.7577.1.S1_at--624--10631Chr08:18645706..18645730 (25 bp)
TTCGCGGTGATGTCCTACAGGCCAA
LOC_Os08g30520
Os.7577.1.S1_at--1069--7331Chr08:18645731..18645755 (25 bp)
GTGCAAAACTCAACTCCTAGCTAGT
LOC_Os08g30520
Os.7577.1.S1_at--630--151Chr08:18645753..18645777 (25 bp)
AGTTAGCTATACTCTAACCGGCCCT
LOC_Os08g30520
Os.7577.1.S1_at--826--7251Chr08:18645782..18645806 (25 bp)
GTCCGTCCTGTGATTCAATTTGCTG
LOC_Os08g30520
Os.7577.1.S1_at--787--6732Chr08:18645841..18645865 (25 bp)
GTTCTTGTTGTCTCCAATTTCATAA
LOC_Os08g30520
Os.7577.1.S1_at--937--10451Chr08:18645872..18645896 (25 bp)
TTAGCCTAACACGATCACCTTCTTG
LOC_Os08g30520
Target Sequence 
GAGAAGATGAGCTGCGTGTTCCGCAACGTGCTGGCGTTCGAGCAGGACAGCGGCGCCGGCGTGGAGCGCGACGCGTACGT
GACGGCGTACGTGGTGTTCATGTCGCAGCTGCTGGGGAGCGCTGGGGACGTGGCGGTGCTGTCCCGGTCGGGCGTCATGG
AGCACTCGCTCGGGAACGACGGCGACGCGTGCGCCCTGTTCCGGGGGCTCGCGAGGGGCCTCGCCTTCGACACCGACGGC
GATCACTACCTGCGAGGGGTGGGGCTGGAGCTCAACAGGCACCACGGACGCCGCCTCAACCGCTGGCTCGCGTGGGTGGC
GCGCCGCCACTTCGACAACCCGTGGCTCATATTGGCCTGGCTCGCCGCCGCCGTCCTCCTCCTCTGCACGCTCGTGCAGA
CGGTGTTCGCGGTGATGTCCTACAGGCCAAGTGCAAAACTCAACTCCTAGCTAGTTAGCTATACTCTAACCGGCCCTGTC
GGTCCGTCCTGTGATTCAATTTGCTGGGCAATTAATTACTGCTTGCGTTTTGTTATATATGTTCTTGTTGTCTCCAATTT
CATAATTGATCTTAGCCTAACACGATCACCTTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis