Browse Element(s) Details


Os.12924.1.S1_s_at

Description gb:AU223384
DB_XREF= gi:15008996
DB_XREF=AU223384
CLONE=S6240
TID=Os.12924.1
CNT=11
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12924 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_179569.1 (A.thaliana) putative clathrin assembly protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3048010/11Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30440Os.46334.1.S1_x_at4/118+18602696..18605776hypothetical protein
LOC_Os08g30440Os.27435.1.S1_x_at2/118+18602696..18605776hypothetical protein
LOC_Os08g30440Os.46334.1.S1_at1/118+18602696..18605776hypothetical protein
LOC_Os08g30450OsAffx.22421.2.S1_at5/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.1.S1_at3/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.4.S1_x_at2/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.3.S1_at1/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30460OsAffx.7866.1.S1_x_at1/118+18616890..18617456hypothetical protein
LOC_Os08g30470OsAffx.29436.1.S1_at11/118+18619456..18620884hypothetical protein
LOC_Os08g30480OsAffx.17241.1.S1_at11/118+18625646..18627550Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os08g30480Os.12924.1.S1_s_at10/118+18625646..18627550Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os08g30490Os.54892.1.S1_at11/118+18632454..18635218expressed protein
LOC_Os08g30500NANA8+18635935..18636243hypothetical protein
LOC_Os08g30510Os.11326.1.S1_at5/118+18637479..18638591expressed protein
LOC_Os08g30520Os.7577.1.S1_at11/118+18643961..18645898expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12924.1.S1_s_at--501--3251NONE
CAACGACGAGAATGAGCTAGCTATT
NONE
Os.12924.1.S1_s_at--721--5271Chr08:18626991..18627015 (25 bp)
GAATGAGCTAGCTATTCTCGAATTC
LOC_Os08g30480
Os.12924.1.S1_s_at--1044--4851Chr08:18626997..18627021 (25 bp)
GCTAGCTATTCTCGAATTCATTCAT
LOC_Os08g30480
Os.12924.1.S1_s_at--474--10351Chr08:18627023..18627047 (25 bp)
TTTTTGTGGAAACTATGGACCGCCA
LOC_Os08g30480
Os.12924.1.S1_s_at--888--8511Chr08:18627029..18627053 (25 bp)
TGGAAACTATGGACCGCCACTTCGG
LOC_Os08g30480
Os.12924.1.S1_s_at--463--10111Chr08:18627036..18627060 (25 bp)
TATGGACCGCCACTTCGGAAATGTG
LOC_Os08g30480
Os.12924.1.S1_s_at--633--5471Chr08:18627163..18627187 (25 bp)
GAACTCGACATCATGTTCCATCTAG
LOC_Os08g30480
Os.12924.1.S1_s_at--782--6251Chr08:18627213..18627237 (25 bp)
GATGGTGATGAATGGCTGCATAGTA
LOC_Os08g30480
Os.12924.1.S1_s_at--1160--8311Chr08:18627226..18627250 (25 bp)
GGCTGCATAGTAGAGACAAGTAAAC
LOC_Os08g30480
Os.12924.1.S1_s_at--121--5491Chr08:18627252..18627276 (25 bp)
GAACATCTTAGCACCAATCCAGCTT
LOC_Os08g30480
Os.12924.1.S1_s_at--897--10011Chr08:18627260..18627284 (25 bp)
TAGCACCAATCCAGCTTATGGAGAA
LOC_Os08g30480
Target Sequence 
CAACGACGAGAATGAGCTAGCTATTCTCGAATTCATTCATCTTTTTGTGGAAACTATGGACCGCCACTTCGGAAATGTGT
GTGAACTCGACATCATGTTCCATCTAGAGAAGGTGCACTTCATGCTGGAAGAGATGGTGATGAATGGCTGCATAGTAGAG
ACAAGTAAACAGAACATCTTAGCACCAATCCAGCTTATGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12924.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis