Browse Element(s) Details


OsAffx.29436.1.S1_at

Description tigr:9636.m03039
TID=OsAffx.29436.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3047011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30430NANA8+18597129..18597635hypothetical protein
LOC_Os08g30440Os.46334.1.S1_x_at4/118+18602696..18605776hypothetical protein
LOC_Os08g30440Os.27435.1.S1_x_at2/118+18602696..18605776hypothetical protein
LOC_Os08g30440Os.46334.1.S1_at1/118+18602696..18605776hypothetical protein
LOC_Os08g30450OsAffx.22421.2.S1_at5/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.1.S1_at3/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.4.S1_x_at2/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30450OsAffx.22421.3.S1_at1/118+18609410..18612641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30460OsAffx.7866.1.S1_x_at1/118+18616890..18617456hypothetical protein
LOC_Os08g30470OsAffx.29436.1.S1_at11/118+18619456..18620884hypothetical protein
LOC_Os08g30480OsAffx.17241.1.S1_at11/118+18625646..18627550Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os08g30480Os.12924.1.S1_s_at10/118+18625646..18627550Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os08g30490Os.54892.1.S1_at11/118+18632454..18635218expressed protein
LOC_Os08g30500NANA8+18635935..18636243hypothetical protein
LOC_Os08g30510Os.11326.1.S1_at5/118+18637479..18638591expressed protein
LOC_Os08g30520Os.7577.1.S1_at11/118+18643961..18645898expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29436.1.S1_at--250--1251Chr08:18619981..18620005 (25 bp)
AGTTGTGCCTTCATTCATTGTTTAC
LOC_Os08g30470
OsAffx.29436.1.S1_at--389--9591Chr08:18619967..18619991 (25 bp)
TCATTGTTTACCCTCAGTTTTGGAA
LOC_Os08g30470
OsAffx.29436.1.S1_at--85--9091Chr08:18619940..18619964 (25 bp)
TGCTCAGCATTTGTAGGACTCTCCT
LOC_Os08g30470
OsAffx.29436.1.S1_at--7--951Chr08:18619926..18619950 (25 bp)
AGGACTCTCCTGTGTGGGCCAAGAT
LOC_Os08g30470
OsAffx.29436.1.S1_at--934--4451Chr08:18619894..18619918 (25 bp)
GCCTCAGCCCATGTCATCTGATGTA
LOC_Os08g30470
OsAffx.29436.1.S1_at--1031--471Chr08:18619879..18619903 (25 bp)
ATCTGATGTAGTCCCATACCAGCTG
LOC_Os08g30470
OsAffx.29436.1.S1_at--238--7271Chr08:18619851..18619875 (25 bp)
GTCCATCATGTTTTTCAATTTGCCA
LOC_Os08g30470
OsAffx.29436.1.S1_at--262--10511Chr08:18619838..18619862 (25 bp)
TTCAATTTGCCATGCTAGCTTCTGC
LOC_Os08g30470
OsAffx.29436.1.S1_at--668--10011Chr08:18619823..18619847 (25 bp)
TAGCTTCTGCATTGATATGGGCCAA
LOC_Os08g30470
OsAffx.29436.1.S1_at--495--191Chr08:18619773..18619797 (25 bp)
ATTTCAGTCCAACCGATTCAAGCTA
LOC_Os08g30470
OsAffx.29436.1.S1_at--545--6831Chr08:18619731..18619755 (25 bp)
GTTTCAGTGTTGAATCTTCTCCTGG
LOC_Os08g30470
Target Sequence 
AGTTGTGCCTTCATTCATTGTTTACCCTCAGTTTTGGAAACTGCTCAGCATTTGTAGGACTCTCCTGTGTGGGCCAAGAT
TGCTTGGGCCTCAGCCCATGTCATCTGATGTAGTCCCATACCAGCTGCCTGTCCATCATGTTTTTCAATTTGCCATGCTA
GCTTCTGCATTGATATGGGCCAAAGAAAACTGGGTCAGCCAACAAGTTATTTCAGTCCAACCGATTCAAGCTATCCATCC
TCAACACACAGTTTCAGTGTTGAATCTTCTCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis