Browse Element(s) Details


Os.18001.3.S1_at

Description gb:NM_192933.1
DB_XREF= gi:34912949
GEN=OSJNBb0035I14.15
TID=Os.18001.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0035I14.15 (OSJNBb0035I14.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0035I14.15 (OSJNBb0035I14.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4404010/11O-acetyltransferase, putative, expressed
LOC_Os05g505103/11O-acetyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43970Os.35344.18.S1_x_at9/111+25523386..25528938transposon protein, putative, Mutator sub-class
LOC_Os01g43970Os.35344.3.S1_x_at8/111+25523386..25528938transposon protein, putative, Mutator sub-class
LOC_Os01g43970OsAffx.22940.5.S1_at7/111+25523386..25528938transposon protein, putative, Mutator sub-class
LOC_Os01g43970OsAffx.22940.5.S1_x_at4/111+25523386..25528938transposon protein, putative, Mutator sub-class
LOC_Os01g43980Os.52319.1.S1_x_at3/111+25530174..25537463AT hook motif-containing protein, putative
LOC_Os01g43990NANA1+25537893..25539150hypothetical protein
LOC_Os01g44000NANA1+25542114..25542356hypothetical protein
LOC_Os01g44010NANA1+25545180..25545707transposon protein, putative, unclassified
LOC_Os01g44020Os.53006.1.S1_at2/111+25546989..25547990hypothetical protein
LOC_Os01g44020Os.38237.1.S1_s_at1/111+25546989..25547990hypothetical protein
LOC_Os01g44030OsAffx.13596.1.S1_at9/111+25549249..25550842hypothetical protein
LOC_Os01g44040Os.18001.3.S1_x_at11/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.2.S1_x_at11/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.3.S1_at10/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.1.S1_at10/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.27520.2.S1_x_at1/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44050Os.4863.1.S1_at11/111+25561556..25565013Tetrapyrrole Methylases family protein, expressed
LOC_Os01g44050Os.4863.2.S1_at11/111+25561556..25565013Tetrapyrrole Methylases family protein, expressed
LOC_Os01g44069Os.33373.1.S2_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S2_x_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S1_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S1_x_at11/111+25583849..25590634Acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016413molecular_functionO-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18001.3.S1_at--572--9891Chr01:25558202..25558277 (25 bp)
TACTTCCATCCAAATAGTCTTTGTC
LOC_Os01g44040
Os.18001.3.S1_at--874--10671Chr01:25558205..25558280 (25 bp)
TTCCATCCAAATAGTCTTTGTCCTT
LOC_Os01g44040
Os.18001.3.S1_at--401--9211Chr01:25558210..25558285 (25 bp)
TCCAAATAGTCTTTGTCCTTCTGCC
LOC_Os01g44040
Os.18001.3.S1_at--1116--2251Chr01:25558268..25558288 (21 bp)
AAATAGTCTTTGTCCTTCTGCCCTT
LOC_Os01g44040
Os.18001.3.S1_at--383--291NONE
ATAGTCTTTGTCCTTCTGCCCTTCT
NONE
Os.18001.3.S1_at--921--10791Chr01:25558297..25558321 (25 bp)
TTGTTTATGTAGGATGCAATTCATT
LOC_Os01g44040
Os.18001.3.S1_at--105--7991Chr01:25558308..25558332 (25 bp)
GGATGCAATTCATTATGCTATGGTT
LOC_Os01g44040
Os.18001.3.S1_at--652--151Chr01:25558319..25558369 (25 bp)
ATTATGCTATGGTTTCAGGTTGAAA
LOC_Os01g44040
Os.18001.3.S1_at--399--832Chr01:25558653..25558914 (25 bp)
ATGGATTCCTATCACGTGGCTTGGC
LOC_Os01g44040
Os.18001.3.S1_at--1109--7912Chr01:25558655..25558916 (25 bp)
GGATTCCTATCACGTGGCTTGGCAA
LOC_Os01g44040
Os.18001.3.S1_at--568--92Chr01:25558657..25558918 (25 bp)
ATTCCTATCACGTGGCTTGGCAAGA
LOC_Os01g44040
Target Sequence 
TACTTCCATCCAAATAGTCTTTGTCCTTCTGCCCTTCTCCATCATTGTTTATGTAGGATGCAATTCATTATGCTATGGTT
TCAGGTTGAAAGATGGATGGAAAAGCTTGAAGAATCTGAAACTAAGGTTAGGTTGTCAATTAAGGGAACCATCATTAGTA
TTTCCTTGGTGGCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATACAACAAGTACCATCCGTAC
ACATCATGGATTCCTATCACGTGGCTTGGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18001.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis