Browse Element(s) Details


Os.4863.2.S1_at

Description gb:NM_192934.1
DB_XREF= gi:34912951
GEN=OSJNBb0035I14.16
TID=Os.4863.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4863 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) uroporphyrin-III C-methyltransferase-like protein (OSJNBb0035I14.16), mRNA.
PROD=uroporphyrin-III C-methyltransferase-likeprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4405011/11Tetrapyrrole Methylases family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43980Os.52319.1.S1_x_at3/111+25530174..25537463AT hook motif-containing protein, putative
LOC_Os01g43990NANA1+25537893..25539150hypothetical protein
LOC_Os01g44000NANA1+25542114..25542356hypothetical protein
LOC_Os01g44010NANA1+25545180..25545707transposon protein, putative, unclassified
LOC_Os01g44020Os.53006.1.S1_at2/111+25546989..25547990hypothetical protein
LOC_Os01g44020Os.38237.1.S1_s_at1/111+25546989..25547990hypothetical protein
LOC_Os01g44030OsAffx.13596.1.S1_at9/111+25549249..25550842hypothetical protein
LOC_Os01g44040Os.18001.3.S1_x_at11/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.2.S1_x_at11/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.3.S1_at10/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.1.S1_at10/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.27520.2.S1_x_at1/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44050Os.4863.1.S1_at11/111+25561556..25565013Tetrapyrrole Methylases family protein, expressed
LOC_Os01g44050Os.4863.2.S1_at11/111+25561556..25565013Tetrapyrrole Methylases family protein, expressed
LOC_Os01g44069Os.33373.1.S2_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S2_x_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S1_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S1_x_at11/111+25583849..25590634Acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006779biological_processporphyrin biosynthesis
GO:0004851molecular_functionuroporphyrin-III C-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4863.2.S1_at--760--7811Chr01:25564282..25564306 (25 bp)
GGTATTCGCCATGTTAAAGGATTTT
LOC_Os01g44050
Os.4863.2.S1_at--752--10391Chr01:25564303..25564327 (25 bp)
TTTTGTGAATGAAGTCAAGTCGGAG
LOC_Os01g44050
Os.4863.2.S1_at--1135--8011Chr01:25564324..25564348 (25 bp)
GGAGGATCTAGTCTCTCCTACTCTG
LOC_Os01g44050
Os.4863.2.S1_at--303--451Chr01:25564329..25564353 (25 bp)
ATCTAGTCTCTCCTACTCTGATAAT
LOC_Os01g44050
Os.4863.2.S1_at--1025--7151Chr01:25564334..25564358 (25 bp)
GTCTCTCCTACTCTGATAATTATTG
LOC_Os01g44050
Os.4863.2.S1_at--534--351Chr01:25564349..25564373 (25 bp)
ATAATTATTGGGAAGGTGGTGGCAT
LOC_Os01g44050
Os.4863.2.S1_at--241--7491Chr01:25564364..25564388 (25 bp)
GTGGTGGCATTGTCACCCTTTTGGA
LOC_Os01g44050
Os.4863.2.S1_at--1059--4931Chr01:25564370..25564394 (25 bp)
GCATTGTCACCCTTTTGGATCGATT
LOC_Os01g44050
Os.4863.2.S1_at--978--8731Chr01:25564374..25564398 (25 bp)
TGTCACCCTTTTGGATCGATTCATC
LOC_Os01g44050
Os.4863.2.S1_at--740--511Chr01:25564388..25564412 (25 bp)
ATCGATTCATCCAAACAGGGTGCAC
LOC_Os01g44050
Os.4863.2.S1_at--615--3531Chr01:25564395..25564419 (25 bp)
CATCCAAACAGGGTGCACAATCCAT
LOC_Os01g44050
Target Sequence 
GGTATTCGCCATGTTAAAGGATTTTGTGAATGAAGTCAAGTCGGAGGATCTAGTCTCTCCTACTCTGATAATTATTGGGA
AGGTGGTGGCATTGTCACCCTTTTGGATCGATTCATCCAAACAGGGTGCACAATCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4863.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis