Browse Element(s) Details


OsAffx.13596.1.S1_at

Description tigr:9631.m06331
TID=OsAffx.13596.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6388011/11hypothetical protein
LOC_Os01g440309/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63850NANA3+36012162..36013280F-box domain containing protein, expressed
LOC_Os03g63860Os.9474.1.S1_at11/113+36013906..36018768DANA2, putative, expressed
LOC_Os03g63870Os.53006.1.S1_at11/113+36021354..36035469expressed protein
LOC_Os03g63870Os.52319.1.S1_x_at3/113+36021354..36035469expressed protein
LOC_Os03g63870Os.52311.1.S1_at2/113+36021354..36035469expressed protein
LOC_Os03g63870OsAffx.22945.1.S1_at2/113+36021354..36035469expressed protein
LOC_Os03g63870Os.49936.2.A1_at1/113+36021354..36035469expressed protein
LOC_Os03g63870Os.38237.1.S1_s_at1/113+36021354..36035469expressed protein
LOC_Os03g63880OsAffx.13596.1.S1_at11/113+36036153..36037240hypothetical protein
LOC_Os03g63890NANA3+36039442..36039871myb family transcription factor, putative
LOC_Os03g63900Os.21024.1.S1_at11/113+36042503..36044053oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g63910Os.27221.1.A1_at11/113+36046286..36050827pentatricopeptide, putative, expressed
LOC_Os03g63910Os.9010.4.S1_x_at5/113+36046286..36050827pentatricopeptide, putative, expressed
LOC_Os03g63920Os.9010.3.S1_x_at10/113+36053038..36058313KAP-2, putative, expressed
LOC_Os03g63920Os.9010.1.S1_x_at6/113+36053038..36058313KAP-2, putative, expressed
LOC_Os03g63930Os.15249.1.S1_at11/113+36058608..36060953Acyl carrier protein III, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13596.1.S1_at--713--4412Chr03:36036724..36036748 (25 bp)
GCCACCTTGTGCACATCAGGTCGAA
LOC_Os03g63880
OsAffx.13596.1.S1_at--139--4112Chr03:36036703..36036727 (25 bp)
CGAAAATGTTGTTGTCTGAGATCCT
LOC_Os03g63880
OsAffx.13596.1.S1_at--412--6032Chr03:36036686..36036710 (25 bp)
GAGATCCTTAGAAGCATAGGCGCTA
LOC_Os03g63880
OsAffx.13596.1.S1_at--343--52Chr03:36036646..36036670 (25 bp)
ATTGTCATGCTGTCACTGATGGGTA
LOC_Os03g63880
OsAffx.13596.1.S1_at--367--3872Chr03:36036631..36036655 (25 bp)
CTGATGGGTATGTTGGCTCTGCTGA
LOC_Os03g63880
OsAffx.13596.1.S1_at--141--5372Chr03:36036578..36036602 (25 bp)
GAAGAGCCATTTCTTGTTCGTGCAC
LOC_Os03g63880
OsAffx.13596.1.S1_at--784--8272Chr03:36036551..36036575 (25 bp)
GGCATCCCAGCTATAAGGCCATGTG
LOC_Os03g63880
OsAffx.13596.1.S1_at--970--5112Chr03:36036509..36036533 (25 bp)
GCACATGCACTAATTGCTGTTATCA
LOC_Os03g63880
OsAffx.13596.1.S1_at--1033--9352Chr03:36036463..36036487 (25 bp)
TCGAAGATACGAACTGGCTTGATAT
LOC_Os03g63880
OsAffx.13596.1.S1_at--896--2732Chr03:36036362..36036386 (25 bp)
AAGAAGGCTCGTTTGCTAGAAATTG
LOC_Os03g63880
OsAffx.13596.1.S1_at--1031--711Chr03:36036282..36036306 (25 bp)
ATGTTCCTTTGCTTTAGGAGGCCCT
LOC_Os03g63880
Target Sequence 
GCCACCTTGTGCACATCAGGTCGAAAATGTTGTTGTCTGAGATCCTTAGAAGCATAGGCGCTAATGAGGCACGNTATAAT
TGTCATGCTGTCACTGATGGGTATGTTGGCTCTGCTGAGGCATCTGTTTATGGTGTAAGAGGAGGTGAAGAGCCATTTCT
TGTTCGTGCACATGGCATCCCAGCTATAAGGCCATGTGATGCGGAAGAAAGTGCNGCACATGCACTAATTGCTGTTATCA
AGAAAGAGTGCAGAGTGGAGATCGAAGATACGAACTGGCTTGATATGAATCGCTATCACGCTNAGGTGTTCNGACTGAAG
AGAGCTCTTGGGAGAGTCAGGAAGGAACGTAATAGTCTTGCAAAGAAGGCTCGTTTGCTAGAAATTGGTTGGGATAGAGC
TTTAGATTCATTGGCTTTTGTGAATCAAATATGTAATGATACATGTTCCTTTGCTTTAGGAGGCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis