Browse Element(s) Details


Os.9010.1.S1_x_at

Description gb:AK070146.1
DB_XREF= gi:32980170
TID=Os.9010.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9010 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042F12, full insert sequence.
FL= gb:AK070146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g639206/11KAP-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63870Os.53006.1.S1_at11/113+36021354..36035469expressed protein
LOC_Os03g63870Os.52319.1.S1_x_at3/113+36021354..36035469expressed protein
LOC_Os03g63870Os.52311.1.S1_at2/113+36021354..36035469expressed protein
LOC_Os03g63870OsAffx.22945.1.S1_at2/113+36021354..36035469expressed protein
LOC_Os03g63870Os.49936.2.A1_at1/113+36021354..36035469expressed protein
LOC_Os03g63870Os.38237.1.S1_s_at1/113+36021354..36035469expressed protein
LOC_Os03g63880OsAffx.13596.1.S1_at11/113+36036153..36037240hypothetical protein
LOC_Os03g63890NANA3+36039442..36039871myb family transcription factor, putative
LOC_Os03g63900Os.21024.1.S1_at11/113+36042503..36044053oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g63910Os.27221.1.A1_at11/113+36046286..36050827pentatricopeptide, putative, expressed
LOC_Os03g63910Os.9010.4.S1_x_at5/113+36046286..36050827pentatricopeptide, putative, expressed
LOC_Os03g63920Os.9010.3.S1_x_at10/113+36053038..36058313KAP-2, putative, expressed
LOC_Os03g63920Os.9010.1.S1_x_at6/113+36053038..36058313KAP-2, putative, expressed
LOC_Os03g63930Os.15249.1.S1_at11/113+36058608..36060953Acyl carrier protein III, chloroplast precursor, putative, expressed
LOC_Os03g63940Os.19126.1.S1_at11/113+36063410..36070970protein kinase AKINbetagamma-2, putative, expressed
LOC_Os03g63950Os.11795.1.S1_a_at11/113+36071028..36073531Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed
LOC_Os03g63950Os.11795.1.S1_s_at11/113+36071028..36073531Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006303biological_processdouble-strand break repair via nonhomologous end joining
GO:0003690molecular_functiondouble-stranded DNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9010.1.S1_x_at--1132--6411Chr03:36057730..36057754 (25 bp)
GATCTAGCTCAACGTGGGTTCAGAC
LOC_Os03g63920
Os.9010.1.S1_x_at--512--8031Chr03:36057833..36057857 (25 bp)
GGAGTGCCTTGTTGCTTTACGGAAG
LOC_Os03g63920
Os.9010.1.S1_x_at--822--9911Chr03:36057850..36057874 (25 bp)
TACGGAAGGCCTGCATTATTGAACA
LOC_Os03g63920
Os.9010.1.S1_x_at--340--4791Chr03:36058046..36058070 (25 bp)
GCTCTGTCAGAAATTTAGGCCGGCT
LOC_Os03g63920
Os.9010.1.S1_x_at--744--10371Chr03:36058082..36058106 (25 bp)
TTTTTTGCAGCTTCTTTCGTCCAAG
LOC_Os03g63920
Os.9010.1.S1_x_at--251--10311NONE
TTTCGTCCAAGAAAGCTTCGCTCAT
NONE
Os.9010.1.S1_x_at--1103--5971Chr03:36058260..36058284 (25 bp)
GAGAAACTTCTGTCTGAAACCCGAG
LOC_Os03g63920
Os.9010.1.S1_x_at--873--8291Chr03:36058326..36058350 (25 bp)
GGCTTTGAGTTCTGAAGGCCTGGAA
NONE
Os.9010.1.S1_x_at--1014--8171Chr03:36058370..36058394 (25 bp)
GGAAGACATCGAACGGCCCTAGTAC
NONE
Os.9010.1.S1_x_at--91--9811Chr03:36058392..36058416 (25 bp)
TACTAATTTCTAACGTACGCCTGGT
NONE
Os.9010.1.S1_x_at--409--3971Chr03:36058434..36058458 (25 bp)
CGGTTTTTGGAAAGCTCTGTGTCAT
NONE
Target Sequence 
GATCTAGCTCAACGTGGGTTCAGACGGCAATTGAAGAGATGCAGAAGTACATAACCGCTTTAATACAGGATTCCTGTGAT
CGGGATAATCACCAAAAGGCACTGGAGTGCCTTGTTGCTTTACGGAAGGCCTGCATTATTGAACAGGAACCAAACGAATA
CAATGGATTCGTAACAAAGCTCTGTCAGAAATTTAGGCCGGCTGGTGATAAAATTTTTTTGCAGCTTCTTTCGTCCAAGA
AAGCTTCGCTCATAAGCAAAGAAGAAGCACCTGATAGCGATGTGACGGAAGAGATGGCGAGAAACTTCTGTCTGAAACCC
GAGCCGTCCTCTCAGTAGCCGAGACTGCAGGCATGGATGTGGATGGCTTTGAGTTCTGAAGGCCTGGAAGCTAGGTAAAA
GAGGAACTGGAAGACATCGAACGGCCCTAGTACTAATTTCTAACGTACGCCTGGTTAAAATGTTATGTAGCTCGGTTTTT
GGAAAGCTCTGTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9010.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis