Browse Element(s) Details


Os.21024.1.S1_at

Description gb:AK071626.1
DB_XREF= gi:32981649
TID=Os.21024.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.21024 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105N19, full insert sequence.
FL= gb:AK071626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6390011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63860Os.9474.1.S1_at11/113+36013906..36018768DANA2, putative, expressed
LOC_Os03g63870Os.53006.1.S1_at11/113+36021354..36035469expressed protein
LOC_Os03g63870Os.52319.1.S1_x_at3/113+36021354..36035469expressed protein
LOC_Os03g63870Os.52311.1.S1_at2/113+36021354..36035469expressed protein
LOC_Os03g63870OsAffx.22945.1.S1_at2/113+36021354..36035469expressed protein
LOC_Os03g63870Os.49936.2.A1_at1/113+36021354..36035469expressed protein
LOC_Os03g63870Os.38237.1.S1_s_at1/113+36021354..36035469expressed protein
LOC_Os03g63880OsAffx.13596.1.S1_at11/113+36036153..36037240hypothetical protein
LOC_Os03g63890NANA3+36039442..36039871myb family transcription factor, putative
LOC_Os03g63900Os.21024.1.S1_at11/113+36042503..36044053oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g63910Os.27221.1.A1_at11/113+36046286..36050827pentatricopeptide, putative, expressed
LOC_Os03g63910Os.9010.4.S1_x_at5/113+36046286..36050827pentatricopeptide, putative, expressed
LOC_Os03g63920Os.9010.3.S1_x_at10/113+36053038..36058313KAP-2, putative, expressed
LOC_Os03g63920Os.9010.1.S1_x_at6/113+36053038..36058313KAP-2, putative, expressed
LOC_Os03g63930Os.15249.1.S1_at11/113+36058608..36060953Acyl carrier protein III, chloroplast precursor, putative, expressed
LOC_Os03g63940Os.19126.1.S1_at11/113+36063410..36070970protein kinase AKINbetagamma-2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016491molecular_functionoxidoreductase activity
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21024.1.S1_at--785--1771Chr03:36043630..36043654 (25 bp)
ACCGGAGCATCAGCGTGGAGGACTA
LOC_Os03g63900
Os.21024.1.S1_at--819--8551Chr03:36043645..36043669 (25 bp)
TGGAGGACTACGTCAGGCTCGTCGT
LOC_Os03g63900
Os.21024.1.S1_at--1124--8091Chr03:36043700..36043724 (25 bp)
GGACGCTGTCAAGATTATTACTACG
LOC_Os03g63900
Os.21024.1.S1_at--188--9611Chr03:36043735..36043759 (25 bp)
TCATCTTATCATGCCTGCTGATTAA
LOC_Os03g63900
Os.21024.1.S1_at--349--371Chr03:36043767..36043791 (25 bp)
ATCAATCTCCCTGGTTGGTTGGTTG
LOC_Os03g63900
Os.21024.1.S1_at--21--10871Chr03:36043781..36043805 (25 bp)
TTGGTTGGTTGCTGCCGAGTAAACT
LOC_Os03g63900
Os.21024.1.S1_at--36--7052Chr03:36043799..36043823 (25 bp)
GTAAACTATTCATGCCACTTCAATT
LOC_Os03g63900
Os.21024.1.S1_at--284--10171Chr03:36043844..36043868 (25 bp)
TATCATGCATACTACTTTCCGTTTT
LOC_Os03g63900
Os.21024.1.S1_at--826--6151Chr03:36043951..36043975 (25 bp)
GAGGTTTGCTTCATTGTACGCTACA
LOC_Os03g63900
Os.21024.1.S1_at--298--6991Chr03:36043966..36043990 (25 bp)
GTACGCTACAGTTGCCTGAGTATAC
LOC_Os03g63900
Os.21024.1.S1_at--447--8311Chr03:36043991..36044015 (25 bp)
GGCTAATGTACATGTGTCTTGCTAC
LOC_Os03g63900
Target Sequence 
ACCGGAGCATCAGCGTGGAGGACTACGTCAGGCTCGTCGTCTCCAGCAAGCTCCAGGGCAAGAACATCTTGGACGCTGTC
AAGATTATTACTACGACTTAATTTCTCATCTTATCATGCCTGCTGATTAATCAATCAATCAATCTCCCTGGTTGGTTGGT
TGCTGCCGAGTAAACTATTCATGCCACTTCAATTATTAGTAGGTAAAAAGGATCTATCATGCATACTACTTTCCGTTTTT
ATTGGAGTAAGGTTTATATAGGAGTACCTTTGAATAAACAAACAAATCTCGTCTACTTTGATGTAAAGGTTTGTTGTATA
TGAGGTTTGCTTCATTGTACGCTACAGTTGCCTGAGTATACGGCTAATGTACATGTGTCTTGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis