Browse Element(s) Details


Os.27221.1.A1_at

Description gb:AK067137.1
DB_XREF= gi:32977155
TID=Os.27221.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013094F15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094F15, full insert sequence.
FL= gb:AK067137.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6391011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63870Os.53006.1.S1_at11/113+36021354..36035469expressed protein
LOC_Os03g63870Os.52319.1.S1_x_at3/113+36021354..36035469expressed protein
LOC_Os03g63870Os.52311.1.S1_at2/113+36021354..36035469expressed protein
LOC_Os03g63870OsAffx.22945.1.S1_at2/113+36021354..36035469expressed protein
LOC_Os03g63870Os.49936.2.A1_at1/113+36021354..36035469expressed protein
LOC_Os03g63870Os.38237.1.S1_s_at1/113+36021354..36035469expressed protein
LOC_Os03g63880OsAffx.13596.1.S1_at11/113+36036153..36037240hypothetical protein
LOC_Os03g63890NANA3+36039442..36039871myb family transcription factor, putative
LOC_Os03g63900Os.21024.1.S1_at11/113+36042503..36044053oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g63910Os.27221.1.A1_at11/113+36046286..36050827pentatricopeptide, putative, expressed
LOC_Os03g63910Os.9010.4.S1_x_at5/113+36046286..36050827pentatricopeptide, putative, expressed
LOC_Os03g63920Os.9010.3.S1_x_at10/113+36053038..36058313KAP-2, putative, expressed
LOC_Os03g63920Os.9010.1.S1_x_at6/113+36053038..36058313KAP-2, putative, expressed
LOC_Os03g63930Os.15249.1.S1_at11/113+36058608..36060953Acyl carrier protein III, chloroplast precursor, putative, expressed
LOC_Os03g63940Os.19126.1.S1_at11/113+36063410..36070970protein kinase AKINbetagamma-2, putative, expressed
LOC_Os03g63950Os.11795.1.S1_a_at11/113+36071028..36073531Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed
LOC_Os03g63950Os.11795.1.S1_s_at11/113+36071028..36073531Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27221.1.A1_at--758--9611Chr03:36048365..36048389 (25 bp)
TCATCGCCGGATGTTGCCGTATGAT
LOC_Os03g63910
Os.27221.1.A1_at--209--10131Chr03:36048384..36048408 (25 bp)
TATGATCGCCGGTTGGTTGCATCAT
LOC_Os03g63910
Os.27221.1.A1_at--985--6651Chr03:36048399..36048423 (25 bp)
GTTGCATCATGCAGTCTTGCAGACA
LOC_Os03g63910
Os.27221.1.A1_at--936--8391Chr03:36048440..36048464 (25 bp)
GGCCGTGCCGTCACATTAAAATGCT
LOC_Os03g63910
Os.27221.1.A1_at--443--3011Chr03:36048459..36048483 (25 bp)
AATGCTCGTCATTGTTTGGTTTTGG
LOC_Os03g63910
Os.27221.1.A1_at--207--8751Chr03:36048545..36048569 (25 bp)
TGTACATGCGCAAACACTCCGGATA
LOC_Os03g63910
Os.27221.1.A1_at--649--1991Chr03:36048560..36048584 (25 bp)
ACTCCGGATAATTGTCATTTCTCTG
LOC_Os03g63910
Os.27221.1.A1_at--721--9511Chr03:36048579..36048603 (25 bp)
TCTCTGCCTTTTTTATACTAGTCCA
LOC_Os03g63910
Os.27221.1.A1_at--783--7011Chr03:36048643..36048667 (25 bp)
GTACTAGTGTGGTTTTCTCACCTCT
LOC_Os03g63910
Os.27221.1.A1_at--271--6011Chr03:36048736..36048760 (25 bp)
GAGAGCTCACAGTTTATGGTTTTTG
LOC_Os03g63910
Os.27221.1.A1_at--850--10211Chr03:36048775..36048799 (25 bp)
TATTACATATCTGGGTCTGGGTGCC
LOC_Os03g63910
Target Sequence 
TCATCGCCGGATGTTGCCGTATGATCGCCGGTTGGTTGCATCATGCAGTCTTGCAGACAGGACAGGAGGGACGACGGCCG
TGCCGTCACATTAAAATGCTCGTCATTGTTTGGTTTTGGTTGGCTGCAAATTAAAATGCTCCCAAAGAATAGGATTGCGA
GGAGGATGGATGGATGGTGCTGTACATGCGCAAACACTCCGGATAATTGTCATTTCTCTGCCTTTTTTATACTAGTCCAG
TTTGTAGGAAGCTGGACAAGTGATAAGCAGATAAGCTAGTACTAGTGTGGTTTTCTCACCTCTTTTATTTATACTCCTAC
TAGATTACTCACAGTTGTTAGGGATGAGGTGAGGGCACTCTGAAGATGAGAGAGAGCTCACAGTTTATGGTTTTTGTACG
ACGAAATTATTATTACATATCTGGGTCTGGGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27221.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis