Browse Element(s) Details


Os.38237.1.S1_s_at

Description gb:AK065042.1
DB_XREF= gi:32975060
TID=Os.38237.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38237 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001H20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001H20, full insert sequence.
FL= gb:AK065042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g440201/11hypothetical protein
LOC_Os03g638701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43970Os.35344.18.S1_x_at9/111+25523386..25528938transposon protein, putative, Mutator sub-class
LOC_Os01g43970Os.35344.3.S1_x_at8/111+25523386..25528938transposon protein, putative, Mutator sub-class
LOC_Os01g43970OsAffx.22940.5.S1_at7/111+25523386..25528938transposon protein, putative, Mutator sub-class
LOC_Os01g43970OsAffx.22940.5.S1_x_at4/111+25523386..25528938transposon protein, putative, Mutator sub-class
LOC_Os01g43980Os.52319.1.S1_x_at3/111+25530174..25537463AT hook motif-containing protein, putative
LOC_Os01g43990NANA1+25537893..25539150hypothetical protein
LOC_Os01g44000NANA1+25542114..25542356hypothetical protein
LOC_Os01g44010NANA1+25545180..25545707transposon protein, putative, unclassified
LOC_Os01g44020Os.53006.1.S1_at2/111+25546989..25547990hypothetical protein
LOC_Os01g44020Os.38237.1.S1_s_at1/111+25546989..25547990hypothetical protein
LOC_Os01g44030OsAffx.13596.1.S1_at9/111+25549249..25550842hypothetical protein
LOC_Os01g44040Os.18001.3.S1_x_at11/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.2.S1_x_at11/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.3.S1_at10/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.1.S1_at10/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.27520.2.S1_x_at1/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44050Os.4863.1.S1_at11/111+25561556..25565013Tetrapyrrole Methylases family protein, expressed
LOC_Os01g44050Os.4863.2.S1_at11/111+25561556..25565013Tetrapyrrole Methylases family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38237.1.S1_s_at--790--2073Chr11:3428741..3428765 (25 bp)
ACATACAAAACCTTCGTTAGCCGCA
NONE
Os.38237.1.S1_s_at--695--8756Chr12:450809..450833 (25 bp)
TGTAGCTCATCTCCTGATGAAGGTG
NONE
Os.38237.1.S1_s_at--771--9614Chr12:450835..450859 (25 bp)
TCATCCCAGAGCTTCAGTATTGTGC
NONE
Os.38237.1.S1_s_at--1142--534Chr12:450837..450861 (25 bp)
ATCCCAGAGCTTCAGTATTGTGCGA
NONE
Os.38237.1.S1_s_at--279--3434Chr12:450841..450865 (25 bp)
CAGAGCTTCAGTATTGTGCGAGCTA
NONE
Os.38237.1.S1_s_at--126--4914Chr12:450845..450869 (25 bp)
GCTTCAGTATTGTGCGAGCTATTCT
NONE
Os.38237.1.S1_s_at--682--10234Chr12:450852..450876 (25 bp)
TATTGTGCGAGCTATTCTGAGATAC
NONE
Os.38237.1.S1_s_at--384--4614Chr12:450858..450882 (25 bp)
GCGAGCTATTCTGAGATACACTGCC
NONE
Os.38237.1.S1_s_at--52--1574Chr12:450861..450885 (25 bp)
AGCTATTCTGAGATACACTGCCACT
NONE
Os.38237.1.S1_s_at--675--8294Chr12:450986..451010 (25 bp)
GGCTCCCATGTAATATTATCCCACC
NONE
Os.38237.1.S1_s_at--949--4314Chr12:450991..451015 (25 bp)
CCATGTAATATTATCCCACCTACCA
NONE
Target Sequence 
ACATACAAAACCTTCGTTAGCCGCATATGATATATAATATAATTATGTTTTCAGATGGGCCAAATGACATGCATCTGTAG
CTCATCTCCTGATGAAGGTGGTCATCCCAGAGCTTCAGTATTGTGCGAGCTATTCTGAGATACACTGCCACTGGAGTCGC
TCAAATGTAAGTAATTATTTTAAACAGTTATGTTCTACTTGTTTGGTTATTTGTTTAAACAAGTACTAACTGCCCATTCA
CTTTATATTTGGGGCTCCCATGTAATATTATCCCACCTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38237.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis