Browse Element(s) Details


Os.27520.2.S1_x_at

Description gb:AY335485.1
DB_XREF= gi:33151120
TID=Os.27520.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27520 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) lipid transfer protein LT1 mRNA, complete cds.
PROD=lipid transfer protein LT1
FL= gb:AY335485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g023799/11Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os01g440401/11O-acetyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02320Os.21252.1.S1_at11/1111+662978..670704nucleotidyltransferase family protein, putative, expressed
LOC_Os11g02310OsAffx.23315.1.S1_s_at2/1111+670598..672211pentatricopeptide, putative
LOC_Os11g02330Os.37860.1.S1_at11/1111+679037..679892expressed protein
LOC_Os11g02330Os.57455.1.S1_x_at6/1111+679037..679892expressed protein
LOC_Os11g02340OsAffx.29227.2.S1_at10/1111+681453..683177hypothetical protein
LOC_Os11g02340OsAffx.29227.1.S1_s_at1/1111+681453..683177hypothetical protein
LOC_Os11g02350Os.4380.1.S1_at11/1111+683780..684610Nonspecific lipid-transfer protein 4 precursor, putative, expressed
LOC_Os11g02360OsAffx.6966.1.S1_at11/1111+685087..686482hypothetical protein
LOC_Os11g02379Os.10615.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10255.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.1.S1_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.38269.1.S1_x_at10/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.2.S1_x_at9/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10615.1.S1_x_at3/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.51910.1.S1_x_at1/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02400Os.26565.1.S1_a_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02400Os.36779.1.S1_s_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02410OsAffx.6967.1.S1_at11/1111+719750..720923hypothetical protein
LOC_Os11g02410OsAffx.31617.1.S1_x_at1/1111+719750..720923hypothetical protein
LOC_Os11g02424Os.10120.1.S2_a_at11/1111+721936..725972expressed protein
LOC_Os11g02424Os.10120.2.S1_at11/1111+721936..725972expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005516molecular_functioncalmodulin binding
GO:0008289molecular_functionlipid binding
GO:0016413molecular_functionO-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27520.2.S1_x_at--1154--1311NONE
AGATGGCCCGTGATGGCCCGTGCAC
NONE
Os.27520.2.S1_x_at--423--6231NONE
GATGGCCCGTGATGGCCCGTGCACA
NONE
Os.27520.2.S1_x_at--1157--3371Chr11:702289..702313 (25 bp)
CAGCCAGCAGCACCGCTGACAGGCG
LOC_Os11g02379
Os.27520.2.S1_x_at--484--3851Chr11:702304..702328 (25 bp)
CTGACAGGCGCACCGCGTGCAACTG
LOC_Os11g02379
Os.27520.2.S1_x_at--568--1611Chr11:702564..702588 (25 bp)
AGCTGAGCTATCGATCGGATGGATC
LOC_Os11g02379
Os.27520.2.S1_x_at--737--4871Chr11:702570..702594 (25 bp)
GCTATCGATCGGATGGATCATTTAT
LOC_Os11g02379
Os.27520.2.S1_x_at--872--6391Chr11:702576..702600 (25 bp)
GATCGGATGGATCATTTATATGCAT
LOC_Os11g02379
Os.27520.2.S1_x_at--982--7992Chr11:702580..702604 (25 bp)
GGATGGATCATTTATATGCATACAG
LOC_Os11g02379
Os.27520.2.S1_x_at--956--251Chr11:702593..702617 (25 bp)
ATATGCATACAGAAGCGCGACGGTG
LOC_Os11g02379
Os.27520.2.S1_x_at--733--2671Chr11:702605..702629 (25 bp)
AAGCGCGACGGTGGGTCGATGTGTG
LOC_Os11g02379
Os.27520.2.S1_x_at--1159--9371Chr11:702620..702644 (25 bp)
TCGATGTGTGGAGCCGATCGAATTC
LOC_Os11g02379
Target Sequence 
AGATGGCCCGTGATGGCCCGTGCACAGTTGGTGTTGGTCGCCGTTGTGGCAGCTCTGCTCCTCGCCGCCCCGCACGCCGC
CGTGGCCATCACCTGCGGCCAGGTCAACTCCGCCGTTGGGCCCTGCCTCACCTACGCCCGCGGCGGCGCCGGCCCGTCGG
CGGCCTGCTGCAGCGGCGTGAGGAGCCTCAAGGCCGCAGCCAGCAGCACCGCTGACAGGCGCACCGCGTGCAACTGCCTC
AAGAACGCGGCCCGCGGCATCAAGGGGCTCAACGCCGGCAACGCCGCCAGCATCCCCTCTAAGTGCGGCGTCAGCGTCCC
CTACACCATCAGCGCTTCCATCGACTGCTCCAGGGTGAGCTGAGCTATCGATCGGATGGATCATTTATATGCATACAGAA
GCGCGACGGTGGGTCGATGTGTGGAGCCGATCGAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27520.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis