Browse Element(s) Details


Os.10120.2.S1_at

Description gb:AK060108.1
DB_XREF= gi:32970126
TID=Os.10120.2
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C09, full insert sequence.
FL= gb:AK060108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0242411/11expressed protein
LOC_Os12g023501/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02379Os.10615.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10255.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.1.S1_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.38269.1.S1_x_at10/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.2.S1_x_at9/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10615.1.S1_x_at3/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.51910.1.S1_x_at1/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02400Os.26565.1.S1_a_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02400Os.36779.1.S1_s_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02410OsAffx.6967.1.S1_at11/1111+719750..720923hypothetical protein
LOC_Os11g02410OsAffx.31617.1.S1_x_at1/1111+719750..720923hypothetical protein
LOC_Os11g02424Os.10120.1.S2_a_at11/1111+721936..725972expressed protein
LOC_Os11g02424Os.10120.2.S1_at11/1111+721936..725972expressed protein
LOC_Os11g02440Os.37295.1.S1_at11/1111+728202..731757Chalcone-flavanone isomerase family protein, expressed
LOC_Os11g02440Os.6354.1.S1_s_at11/1111+728202..731757Chalcone-flavanone isomerase family protein, expressed
LOC_Os11g02450Os.37247.1.S1_at10/1111+733254..736189Elongation factor P, putative, expressed
LOC_Os11g02460OsAffx.6968.1.S1_x_at11/1111+738298..741793chloroplastic outer envelope membrane protein, putative, expressed
LOC_Os11g02470OsAffx.18638.1.S1_at11/1111+749014..750211WRKY DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005319molecular_functionlipid transporter activity
GO:0005515molecular_functionprotein binding
GO:0005516molecular_functioncalmodulin binding
GO:0008270molecular_functionzinc ion binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10120.2.S1_at--146--1831Chr11:725434..725458 (25 bp)
ACGCCGTCGGTGTCGACAGCTGCCA
LOC_Os11g02424
Os.10120.2.S1_at--827--8112Chr12:763675..763697 (23 bp)
GGACTCCATTCTCTCCGTCCATGGA
LOC_Os12g02350
Os.10120.2.S1_at--260--4492Chr12:763707..763730 (24 bp)
GCCGGCGGCCAAACATAGCTAGTAA
NONE
Os.10120.2.S1_at--155--3311Chr11:725820..725844 (25 bp)
CACAATGTTTGAAGTGTCTCTGTCA
LOC_Os11g02424
Os.10120.2.S1_at--102--9011Chr11:725829..725853 (25 bp)
TGAAGTGTCTCTGTCACTTGGATTA
LOC_Os11g02424
Os.10120.2.S1_at--1021--7931Chr11:725848..725872 (25 bp)
GGATTATCCATCTGTTTAGCTGTTT
LOC_Os11g02424
Os.10120.2.S1_at--343--9992Chr12:763873..763897 (25 bp)
TAGCTGTTTCTATGAGTTTTCTCCT
NONE
Os.10120.2.S1_at--787--6072Chr12:763886..763910 (25 bp)
GAGTTTTCTCCTTTAATTTGTGTGC
NONE
Os.10120.2.S1_at--360--7471Chr11:725896..725920 (25 bp)
GTGTGCTAGCACATGATATTTCCCC
LOC_Os11g02424
Os.10120.2.S1_at--533--4132Chr12:763938..763962 (25 bp)
CGCTGTTCGTTTGTTCTGGGCATAA
NONE
Os.10120.2.S1_at--253--7591Chr11:725945..725969 (25 bp)
GGGCATAATTTTGTCACCACTCAAC
LOC_Os11g02424
Target Sequence 
ACGCCGTCGGTGTCGACAGCTGCCACGGCCGGGCTGAAGAAGACGGAGCTGAGGAGGATTCCGGTGGAGGTGTACGGCGC
CAAGCAGGCCGGCGTCCCCGACGGCGAGTGCGCCATCTGCCTGGGCGACTTCGCCGACGGCGACAAGGTGCGCGTGCTCC
CGAGGTGCCACCACGGCTTCCACGTCCGCTGCATCGACACGTGGCTCGCCGCGCACACGTCCTGCCCTACTTGCCGGGAC
TCCATTCTCTCCGTCCATGGAGTCGTCGCCGGCGGCCAAACATAGCTAGTAATATAATTTCTTGAACAGAAGAGGTCTAA
AATGTAAATAGAATATAGGTGGTAAAGTACTCCAAAATTGGGATTGCGTAAATGCAAGGGATTGGACACAATGTTTGAAG
TGTCTCTGTCACTTGGATTATCCATCTGTTTAGCTGTTTCTATGAGTTTTCTCCTTTAATTTGTGTGCTAGCACATGATA
TTTCCCCCAAGATTCGCTGTTCGTTTGTTCTGGGCATAATTTTGTCACCACTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10120.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis