Browse Element(s) Details


OsAffx.18638.1.S1_at

Description tigr:9639.m00153
TID=OsAffx.18638.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0247011/11WRKY DNA binding domain containing protein
LOC_Os12g024003/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02424Os.10120.1.S2_a_at11/1111+721936..725972expressed protein
LOC_Os11g02424Os.10120.2.S1_at11/1111+721936..725972expressed protein
LOC_Os11g02440Os.37295.1.S1_at11/1111+728202..731757Chalcone-flavanone isomerase family protein, expressed
LOC_Os11g02440Os.6354.1.S1_s_at11/1111+728202..731757Chalcone-flavanone isomerase family protein, expressed
LOC_Os11g02450Os.37247.1.S1_at10/1111+733254..736189Elongation factor P, putative, expressed
LOC_Os11g02460OsAffx.6968.1.S1_x_at11/1111+738298..741793chloroplastic outer envelope membrane protein, putative, expressed
LOC_Os11g02470OsAffx.18638.1.S1_at11/1111+749014..750211WRKY DNA binding domain containing protein
LOC_Os11g02480Os.33990.1.S1_at11/1111+758588..762335WRKY DNA binding domain containing protein, expressed
LOC_Os11g02480OsAffx.16011.1.S1_at2/1111+758588..762335WRKY DNA binding domain containing protein, expressed
LOC_Os11g02490Os.43567.1.S1_x_at4/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.29987.1.S1_at3/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.53217.1.S1_x_at2/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02490Os.38172.1.S1_x_at2/1111+770344..772659retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18638.1.S1_at--100--7291Chr11:749677..749701 (25 bp)
GTGCCTCATGAGGATGGCTTTCAGT
LOC_Os11g02470
OsAffx.18638.1.S1_at--1154--1072Chr12:788932..789069 (25 bp)
AGGGCACTCACTTCACAAGGAGCTA
LOC_Os12g02400
OsAffx.18638.1.S1_at--745--6291Chr11:749490..749514 (25 bp)
GATGATAGAGGTTGCCAGGCCACCA
LOC_Os11g02470
OsAffx.18638.1.S1_at--708--2291Chr11:749452..749476 (25 bp)
AAAGGATAAGAACGACCCACCCATG
LOC_Os11g02470
OsAffx.18638.1.S1_at--838--9032Chr12:788795..788819 (25 bp)
TGCACCACCACTAGGCTTATTAACA
LOC_Os12g02400
OsAffx.18638.1.S1_at--36--2471Chr11:749376..749400 (25 bp)
AACAACATCAATAATCCCGCAGCAT
LOC_Os11g02470
OsAffx.18638.1.S1_at--1125--5051Chr11:749358..749382 (25 bp)
GCAGCATTGCACAACTTGACAGCCA
LOC_Os11g02470
OsAffx.18638.1.S1_at--624--9871Chr11:749189..749213 (25 bp)
TACATGTGTGCCAAGAGGTGCCTCC
LOC_Os11g02470
OsAffx.18638.1.S1_at--835--3651Chr11:749165..749189 (25 bp)
CTTCTTCTTCCAATTCATCTGTCAT
LOC_Os11g02470
OsAffx.18638.1.S1_at--72--491Chr11:749149..749173 (25 bp)
ATCTGTCATATCTCACTACGCTGAT
LOC_Os11g02470
OsAffx.18638.1.S1_at--1067--10412Chr12:788436..788460 (25 bp)
TTATTTCTACGATCCAAACCTTCTC
LOC_Os12g02400
Target Sequence 
GTGCCTCATGAGGATGGCTTTCAGTGGAGAAAATATGGAGAGAAGAAGATCCAGGGCACTCACTTCACAAGGAGCTACTT
CAGGTGTACGTATAGAGATGATAGAGGTTGCCAGGCCACCAAGCAAATCCAACAAAAGGATAAGAACGACCCACCCATGT
TCCAAGTGACATACAGCAACGAACACACCTGCACCACCACTAGGCTTATTAACAACATCAATAATCCCGCAGCATTGCAC
AACTTGACAGCCAATCCAAATGGTCACCATGATTCAGATGATGATGATACCATCTTCACCAAGATGATCAAGCAAGAAGA
ACAAGCTGCTTGGCTGCCTCCTCCTCCTCCTGCTGATCTAGCAACCATTTCTAACAATTTCGATGAAACGCCAGGATTAC
ATGTGTGCCAAGAGGTGCCTCCTTCTTCTTCCAATTCATCTGTCATATCTCACTACGCTGATGAATTCGACCATCATCAG
ATGTTGGAGACGACGGTGATGGAGGAAGCATTAGGGCTAGGAGCAGATCTAGATGATCCTTATTTCTACGATCCAAACCT
TCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis