Browse Element(s) Details

Os.10120.1.S2_a_at

Description

gb:AK061740.1
DB_XREF= gi:32971758
TID=Os.10120.1
CNT=45
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-E11, full insert sequence.
FL= gb:AK059383.1 gb:AK061740.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os11g02424	11/11	expressed protein
LOC_Os12g02340	6/11	Nonspecific lipid-transfer protein 3 precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os11g02379	Os.10615.1.S1_s_at	11/11	11	+	692274..702933	Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379	Os.10255.1.S1_s_at	11/11	11	+	692274..702933	Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379	Os.27520.1.S1_at	11/11	11	+	692274..702933	Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379	Os.38269.1.S1_x_at	10/11	11	+	692274..702933	Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379	Os.27520.2.S1_x_at	9/11	11	+	692274..702933	Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379	Os.10615.1.S1_x_at	3/11	11	+	692274..702933	Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379	Os.51910.1.S1_x_at	1/11	11	+	692274..702933	Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02400	Os.26565.1.S1_a_at	11/11	11	+	714405..715481	Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02400	Os.36779.1.S1_s_at	11/11	11	+	714405..715481	Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02410	OsAffx.6967.1.S1_at	11/11	11	+	719750..720923	hypothetical protein
LOC_Os11g02410	OsAffx.31617.1.S1_x_at	1/11	11	+	719750..720923	hypothetical protein
LOC_Os11g02424	Os.10120.1.S2_a_at	11/11	11	+	721936..725972	expressed protein
LOC_Os11g02424	Os.10120.2.S1_at	11/11	11	+	721936..725972	expressed protein
LOC_Os11g02440	Os.37295.1.S1_at	11/11	11	+	728202..731757	Chalcone-flavanone isomerase family protein, expressed
LOC_Os11g02440	Os.6354.1.S1_s_at	11/11	11	+	728202..731757	Chalcone-flavanone isomerase family protein, expressed
LOC_Os11g02450	Os.37247.1.S1_at	10/11	11	+	733254..736189	Elongation factor P, putative, expressed
LOC_Os11g02460	OsAffx.6968.1.S1_x_at	11/11	11	+	738298..741793	chloroplastic outer envelope membrane protein, putative, expressed
LOC_Os11g02470	OsAffx.18638.1.S1_at	11/11	11	+	749014..750211	WRKY DNA binding domain containing protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006649	biological_process	phospholipid transfer to membrane
GO:0006869	biological_process	lipid transport
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0005618	cellular_component	cell wall
GO:0009505	cellular_component	cell wall (sensu Magnoliophyta)
GO:0005319	molecular_function	lipid transporter activity
GO:0005516	molecular_function	calmodulin binding
GO:0008289	molecular_function	lipid binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10120.1.S2_a_at--824--155	1	Chr11:723162..723186 (25 bp)	AGCTTAACACGCTAGCTCGATCGGA	LOC_Os11g02424
Os.10120.1.S2_a_at--436--705	1	Chr11:723238..723262 (25 bp)	GTAATTAAAATAACACCTGCGGCAG	LOC_Os11g02424
Os.10120.1.S2_a_at--412--1049	1	Chr11:723242..723266 (25 bp)	TTAAAATAACACCTGCGGCAGACAT	LOC_Os11g02424
Os.10120.1.S2_a_at--766--165	2	Chr12:761240..761264 (25 bp)	AGCGCTCCATTCTCTCTCTGTATCA	LOC_Os12g02340
Os.10120.1.S2_a_at--1010--479	2	Chr12:761286..761310 (25 bp)	GCTCCCTGTGTGCATGTTCTATCTT	LOC_Os12g02340
Os.10120.1.S2_a_at--765--419	2	Chr12:761289..761313 (25 bp)	CCCTGTGTGCATGTTCTATCTTAAT	LOC_Os12g02340
Os.10120.1.S2_a_at--459--747	2	Chr12:761293..761317 (25 bp)	GTGTGCATGTTCTATCTTAATTTTC	LOC_Os12g02340
Os.10120.1.S2_a_at--150--1049	2	Chr12:761309..761333 (25 bp)	TTAATTTTCTTCAGTATGTACACGA	LOC_Os12g02340
Os.10120.1.S2_a_at--314--957	2	Chr12:761316..761339 (24 bp)	TCTTCAGTATGTACACGATCTGTGT	LOC_Os12g02340
Os.10120.1.S2_a_at--346--405	1	Chr11:723360..723384 (25 bp)	CGATCTGTGTGTACTACGTGTAATC	LOC_Os11g02424
Os.10120.1.S2_a_at--19--389	1	Chr11:723364..723388 (25 bp)	CTGTGTGTACTACGTGTAATCCTAT	LOC_Os11g02424

Target Sequence

AGCTTAACACGCTAGCTCGATCGGAGTTGATCAGCTAGTAATTAAGCACGTATTTGCTACAGCATATATGAACAAAGTAA
TTAAAATAACACCTGCGGCAGACATGCAGCGCTCCATTCTCTCTCTGTATCAGCTGTATACTTTATGTTGCACGCTCCCT
GTGTGCATGTTCTATCTTAATTTTCTTCAGTATGTACACGATCTGTGTGTACTACGTGTAATCCTAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis