Browse Element(s) Details


Os.6354.1.S1_s_at

Description gb:AK099443.1
DB_XREF= gi:32984652
TID=Os.6354.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013021E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021E03, full insert sequence.
FL= gb:AK099443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0244011/11Chalcone-flavanone isomerase family protein, expressed
LOC_Os12g0237011/11Chalcone-flavanone isomerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02400Os.26565.1.S1_a_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02400Os.36779.1.S1_s_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02410OsAffx.6967.1.S1_at11/1111+719750..720923hypothetical protein
LOC_Os11g02410OsAffx.31617.1.S1_x_at1/1111+719750..720923hypothetical protein
LOC_Os11g02424Os.10120.1.S2_a_at11/1111+721936..725972expressed protein
LOC_Os11g02424Os.10120.2.S1_at11/1111+721936..725972expressed protein
LOC_Os11g02440Os.37295.1.S1_at11/1111+728202..731757Chalcone-flavanone isomerase family protein, expressed
LOC_Os11g02440Os.6354.1.S1_s_at11/1111+728202..731757Chalcone-flavanone isomerase family protein, expressed
LOC_Os11g02450Os.37247.1.S1_at10/1111+733254..736189Elongation factor P, putative, expressed
LOC_Os11g02460OsAffx.6968.1.S1_x_at11/1111+738298..741793chloroplastic outer envelope membrane protein, putative, expressed
LOC_Os11g02470OsAffx.18638.1.S1_at11/1111+749014..750211WRKY DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009813biological_processflavonoid biosynthesis
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0045430molecular_functionchalcone isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6354.1.S1_s_at--408--1772Chr12:766004..766028 (25 bp)
ACCTGGGTGGAGAATCTGCAGTTTC
LOC_Os12g02370
Os.6354.1.S1_s_at--609--9052Chr12:765988..766012 (25 bp)
TGCAGTTTCTCCGACGACTGTGAAG
LOC_Os12g02370
Os.6354.1.S1_s_at--701--5872Chr12:765964..765988 (25 bp)
GAGCCTGGCAGATCAATTCGCAGCA
LOC_Os12g02370
Os.6354.1.S1_s_at--756--3332Chr12:765941..765965 (25 bp)
CACTGCTCTCTGCATGAGGCATGGA
LOC_Os12g02370
Os.6354.1.S1_s_at--1030--6432Chr12:765866..765890 (25 bp)
GATCATGCTTTGATTTGTCCAGCTG
LOC_Os12g02370
Os.6354.1.S1_s_at--1005--4812Chr12:765842..765866 (25 bp)
GCTCTCATGTGCATGCTACAATTGA
LOC_Os12g02370
Os.6354.1.S1_s_at--83--10292Chr12:765805..765829 (25 bp)
TTTCCCTACTACTTCAAATGCATGA
LOC_Os12g02370
Os.6354.1.S1_s_at--66--3012Chr12:765789..765813 (25 bp)
AATGCATGATTTACTTGCTCCAAAG
LOC_Os12g02370
Os.6354.1.S1_s_at--942--5272Chr12:765684..765708 (25 bp)
GAAGGTAGGAATCTGTCCCTGTACT
LOC_Os12g02370
Os.6354.1.S1_s_at--278--10492Chr12:765644..765668 (25 bp)
TTAAGTCCACCAGTGGTTCCAACTT
LOC_Os12g02370
Os.6354.1.S1_s_at--974--5632Chr12:765579..765603 (25 bp)
GACACCAGAATATCTTTGAGAGCAA
LOC_Os12g02370
Target Sequence 
ACCTGGGTGGAGAATCTGCAGTTTCTCCGACGACTGTGAAGAGCCTGGCAGATCAATTCGCAGCACTGCTCTCTGCATGA
GGCATGGAGTAATAAACTACTGTAGTAATGTTGCCNGTTTCCCNTTCATTTTTAANTCGATCATGCTTTGATTTGTCCAG
CTGCTCTCATGTGCATGCTACAATTGATAATGGTATTGNTTTCCCTACTACTTCAAATGCATGATTTACTTGCTCCAAAG
CAGAGGAAACATACTCAAATGTATATGTTTCAACTTTACCTGTGTATCTGGTGCAAGCANCCTAAGACAGTGATAGAAGT
GAAGGTAGGAATCTGTCCCTGTACTGCTCATGTGTTGGAATTAAGTCCACCAGTGGTTCCAACTTCCAACTTGTGTATTG
GGCTTGCAAAATGAAGCTGGAAAAAGACACCAGAATATCTTTGAGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6354.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis